Homology analysis

Gene ID At5g23405
Gene name high mobility group (HMG1/2) family protein
Functional description F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFBV

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.294e-1581At5g23420832408HMGB6Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.O.I.C.G.S.X.
0.034e-342At5g14390831290-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMPFVO.I.C.G.S.X.
0.044e-342At1g51730841598RWD domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.C.G.S.X.
0.011e-240At1g06900837200catalytic/ metal ion binding / metalloendopeptidase/ zinc ion bindingF:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:cellular_component unknown;MOBFPVAO.I.C.G.S.X.
0.001e-240At1g70320843368UPL2 (UBIQUITIN-PROTEIN LIGASE 2)encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.O.I.C.G.S.X.
0.036e-238At4g03210828024XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.O.I.C.G.S.X.
0.026e-238At2g25180817056ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12)Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.063e-136Gma.5891.1.S1_atGlycine maxBQ610212--1e-1At5g23405high mobility group (HMG1/2) family proteinO.I.C.G.S.X.
0.064e-134Contig22019_atHordeum vulgareContig22019--7e-1At5g23405high mobility group (HMG1/2) family proteinO.I.C.G.S.X.
0.067e-342Os08g0126200Oryza sativa9636.m00237--2e-4At3g50550unknown proteinO.I.C.G.S.X.
0.053e-136PtpAffx.215294.1.S1_atPopulus trichocarpapmrna29389hypothetical protein-1e-1At5g23405high mobility group (HMG1/2) family proteinO.I.C.G.S.X.
0.042e-136TaAffx.827.1.A1_atTriticum aestivumBJ310377--3e-1At5g23405high mobility group (HMG1/2) family proteinO.I.C.G.S.X.
0.081e-3421612070_atVitis viniferaCF413850hypothetical protein LOC100247584-2e-11At5g23420HMGB6O.I.C.G.S.X.
0.042e-238Zm.6201.1.A1_atZea maysBE643575--1e-1At3g50690leucine-rich repeat family proteinO.I.C.G.S.X.



Back to the CoP portal site

Back to the KAGIANA project homepage