Homology analysis

Gene ID At5g22650
Gene name HD2B (HISTONE DEACETYLASE 2B)
Functional description Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.193e-550At3g44750823605HDA3 (HISTONE DEACETYLASE 3)Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots.O.I.C.G.S.X.
0.043e-550At2g19480816467NAP1This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation.O.I.C.G.S.X.
0.033e-240At2g02880814819mucin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBO.I.C.G.S.X.
0.023e-240At1g58310842200F-box family proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.S.X.
0.021e-138At1g72710843603CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.032e-138PsAffx.C62000050_s_atGlycine maxPsAffx.C62000050--9e-1At4g35190unknown proteinO.I.C.G.S.X.
0.049e-134Contig5793_atHordeum vulgareContig5793--1e-1At5g23950C2 domain-containing proteinO.I.C.G.S.X.
0.052e-757Os05g0597100Oryza sativaAK072845.1-Nucleolar histone deacetylase HD2-p391e-2At3g44750HDA3 (HISTONE DEACETYLASE 3)O.I.C.G.S.X.
0.072e-448Ptp.5518.1.S1_s_atPopulus trichocarpaBU836017histone deacetylase-2e-4At5g22650HD2B (HISTONE DEACETYLASE 2B)O.I.C.G.S.X.
0.043e-240TaAffx.78616.1.S1_x_atTriticum aestivumCA730034--4e-3At2g23320WRKY15O.I.C.G.S.X.
0.064e-8571616293_atVitis viniferaCF212351hypothetical protein LOC100256817-1e-3At3g44750HDA3 (HISTONE DEACETYLASE 3)O.I.C.G.S.X.
0.071e-550Zm.500.1.A1_atZea maysAF254072.1Histone deacetylase 2 isoform b-5e-5At5g22650HD2B (HISTONE DEACETYLASE 2B)O.I.C.G.S.X.



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