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| Gene ID | At5g17790 |
| Gene name | VAR3 (VARIEGATED 3) |
| Functional description | Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells. |
| HF | Ev | BS | Gene ID | Repr. ID | Gene Name | Functional Description | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|
| 0.01 | 3e-1 | 38 | At3g27410 | 822362 | unknown protein | F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P | O.I. | C.G. | S.X. | |
| 0.01 | 1e+0 | 36 | At4g37180 | 829872 | myb family transcription factor | myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen | O.I. | C.G. | S.X. | |
| 0.01 | 1e+0 | 36 | At4g21120 | 827860 | AAT1 (AMINO ACID TRANSPORTER 1) | Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. | O.I. | C.G. | S.X. | |
| 0.01 | 1e+0 | 36 | At3g09560 | 820113 | lipin family protein | F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA | O.I. | C.G. | S.X. | |
| 0.01 | 1e+0 | 36 | At1g76680 | 844001 | OPR1 | Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. | O.I. | C.G. | S.X. | |
| 0.01 | 1e+0 | 36 | At1g68050 | 843133 | FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1) | Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression. | O.I. | C.G. | S.X. |
| HF | Ev | BS | Gene ID | Organism | Repr. ID | Gene Name | Functional Description | Ev | AGI code | Arabidopsis gene name | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.08 | 3e-8 | 61 | GmaAffx.69683.1.S1_at | Glycine max | CA799656 | - | - | 7e-9 | At5g17790 | VAR3 (VARIEGATED 3) | O.I. | C.G. | S.X. | |
| 0.01 | 6e-1 | 36 | Contig25150_at | Hordeum vulgare | Contig25150 | - | - | 3e-1 | At3g23400 | plastid-lipid associated protein PAP / fibrillin family protein | O.I. | C.G. | S.X. | |
| 0.05 | 6e-10 | 67 | Os01g0815700 | Oryza sativa | AK073519.1 | - | Zn-finger, Ran-binding domain containing protein | 5e-10 | At5g17790 | VAR3 (VARIEGATED 3) | O.I. | C.G. | S.X. | |
| 0.06 | 6e-3 | 44 | PtpAffx.158573.1.S1_at | Populus trichocarpa | CX658654 | hypothetical protein | - | 1e-3 | At5g17790 | VAR3 (VARIEGATED 3) | O.I. | C.G. | S.X. | |
| 0.02 | 1e+0 | 36 | Ta.18833.1.S1_at | Triticum aestivum | CA642739 | - | - | 2e+0 | At5g19260 | unknown protein | O.I. | C.G. | S.X. | |
| 0.10 | 7e-21 | 101 | 1617399_at | Vitis vinifera | CB342525 | hypothetical protein LOC100262132 | - | 5e-21 | At5g17790 | VAR3 (VARIEGATED 3) | O.I. | C.G. | S.X. | |
| 0.01 | 3e-2 | 40 | Zm.12657.1.A1_at | Zea mays | CA826570 | - | - | 1e-1 | At1g11580 | PMEPCRA (METHYLESTERASE PCR A) | O.I. | C.G. | S.X. |
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