Homology analysis

Gene ID At5g17790
Gene name VAR3 (VARIEGATED 3)
Functional description Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.013e-138At3g27410822362unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.S.X.
0.011e+036At4g37180829872myb family transcription factormyb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screenO.I.C.G.S.X.
0.011e+036At4g21120827860AAT1 (AMINO ACID TRANSPORTER 1)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system.O.I.C.G.S.X.
0.011e+036At3g09560820113lipin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVAO.I.C.G.S.X.
0.011e+036At1g76680844001OPR1Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.O.I.C.G.S.X.
0.011e+036At1g68050843133FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1)Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.083e-861GmaAffx.69683.1.S1_atGlycine maxCA799656--7e-9At5g17790VAR3 (VARIEGATED 3)O.I.C.G.S.X.
0.016e-136Contig25150_atHordeum vulgareContig25150--3e-1At3g23400plastid-lipid associated protein PAP / fibrillin family proteinO.I.C.G.S.X.
0.056e-1067Os01g0815700Oryza sativaAK073519.1-Zn-finger, Ran-binding domain containing protein5e-10At5g17790VAR3 (VARIEGATED 3)O.I.C.G.S.X.
0.066e-344PtpAffx.158573.1.S1_atPopulus trichocarpaCX658654hypothetical protein-1e-3At5g17790VAR3 (VARIEGATED 3)O.I.C.G.S.X.
0.021e+036Ta.18833.1.S1_atTriticum aestivumCA642739--2e+0At5g19260unknown proteinO.I.C.G.S.X.
0.107e-211011617399_atVitis viniferaCB342525hypothetical protein LOC100262132-5e-21At5g17790VAR3 (VARIEGATED 3)O.I.C.G.S.X.
0.013e-240Zm.12657.1.A1_atZea maysCA826570--1e-1At1g11580PMEPCRA (METHYLESTERASE PCR A)O.I.C.G.S.X.

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