Homology analysis

Gene ID At5g13680
Functional description A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.018e-344At5g08280830724HEMC (HYDROXYMETHYLBILANE SYNTHASE)Encodes a protein with porphobilinogen deaminase activity. This protein is targeted to the chloroplast.O.I.C.G.S.X.
0.011e-140At5g58040835916ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V])Encodes a subunit of the polyadenylation apparatus that interacts with and stimulates the activity of poly(A) polymerase. Additionally , it interacts with several polyadenylation factor subunits and is an RNA-binding protein. It is suggested that this protein coordinates a number of polyadenylation factor subunits with PAP and with RNA.O.I.C.G.S.X.
0.015e-138At4g36890829842IRX14 (irregular xylem 14)The IRX14 gene encodes a putative family 43 glycosyl transferase that contributes to xylan biosynthesis. It was identified based on its gene expression co-variance with the IRX3 gene involved in secondary cell wall synthesis. A biochemical assay using the irx14 mutant indicates that IRX14 might function in xylose chain elongation.O.I.C.G.S.X.
0.015e-138At3g55650824731pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFAO.I.C.G.S.X.
0.015e-138At3g55810824747pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:unknown;BOMPFAO.I.C.G.S.X.
0.015e-138At2g21390816678coatomer protein complex, subunit alpha, putativeF:protein binding, structural molecule activity, transporter activity;P:intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport;C:COPI vesicle coat, CUL4 RING ubiquitin ligase complex, membrane;MFOBPAO.I.C.G.S.X.
0.012e+036Atcg00190--Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution.O.I.C.G.S.X.
0.012e+036At5g19170832037unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.S.X.
0.012e+036At5g66880836822SNRK2.3 (SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 2.3)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.027e-138GmaAffx.60003.1.S1_atGlycine maxAW432419--4e-1At5g35680eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putativeO.I.C.G.S.X.
0.012e-242Contig18125_atHordeum vulgareContig18125--2e-6At4g13250short-chain dehydrogenase/reductase (SDR) family proteinO.I.C.G.S.X.
0.016e-242Os03g0775500Oryza sativaAK121695.1-Protein of unknown function DUF59 domaincontaining protein6e+0At5g28610-O.I.C.G.S.X.
0.022e-140PtpAffx.127230.1.A1_atPopulus trichocarpaCV266202hypothetical protein-4e-1At5g17470calmodulin-related protein, putativeO.I.C.G.S.X.
0.013e-242TaAffx.62827.1.S1_atTriticum aestivumBQ606075--4e+0At1g18600RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12)O.I.C.G.S.X.
0.016e-1361621580_atVitis viniferaCB974796--3e-5At1g488603-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putativeO.I.C.G.S.X.
0.019e-136Zm.4573.1.A1_atZea maysBM340312hypothetical protein LOC100273245-4e-1At1g02350protoporphyrinogen oxidase-relatedO.I.C.G.S.X.

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