CoP: Co-expressed Biological Processes

Homology analysis

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.
0.10	2e-8	59	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	S.X.
0.01	7e-5	48	At2g33540	817919	CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)	F:phosphoprotein phosphatase activity, CTD phosphatase activity;P:response to salt stress;C:nucleus;MOFPBV	O.I.	C.G.	S.X.
0.05	2e-2	40	At1g70470	843383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PFMB	O.I.	C.G.	S.X.
0.02	6e-2	38	At5g10250	830889	DOT3 (DEFECTIVELY ORGANIZED TRIBUTARIES 3)	Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves.	O.I.	C.G.	S.X.
0.01	6e-2	38	At4g13340	826964	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVA	O.I.	C.G.	S.X.
0.02	6e-2	38	At1g12570	837814	glucose-methanol-choline (GMC) oxidoreductase family protein	F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA	O.I.	C.G.	S.X.

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.
0.20	7e-21	101	Gma.8536.1.S1_s_at	Glycine max	L28003.1	bZIP transcription factor bZIP36 /// TGACG-motif-binding factor	-	1e-20	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	O.I.	C.G.	S.X.
0.08	2e-3	42	Contig15369_at	Hordeum vulgare	Contig15369	-	-	1e-4	At3g17609	HYH (HY5-HOMOLOG)	O.I.	C.G.	S.X.
0.16	8e-6	52	OsAffx.2569.1.S1_s_at	Oryza sativa	-	-	-	0			O.I.	C.G.	S.X.
0.26	3e-38	159	PtpAffx.79743.1.S1_at	Populus trichocarpa	CK095368	hypothetical protein	-	4e-38	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	O.I.	C.G.	S.X.
0.04	3e-1	36	TaAffx.64902.1.S1_at	Triticum aestivum	BJ270407	-	-	3e-1	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	O.I.	C.G.	S.X.
0.34	4e-25	113	1609930_at	Vitis vinifera	CB340826	hypothetical LOC100243959	-	3e-24	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	O.I.	C.G.	S.X.
0.03	2e+0	32	Zm.4897.1.S1_at	Zea mays	AI782873	-	-	2e+1	At5g42770	-	O.I.	C.G.	S.X.

Gene ID	At5g11260
Gene name	HY5 (ELONGATED HYPOCOTYL 5)
Functional description	Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.