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| Gene ID | At5g04560 |
| Gene name | DME (DEMETER) |
| Functional description | Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. |
| HF | Ev | BS | Gene ID | Repr. ID | Gene Name | Functional Description | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|
| 0.10 | 4e-36 | 155 | At2g36490 | 818224 | DML1 (DEMETER-LIKE 1) | A repressor of transcriptional gene silencing. Functions by demethylating the target promoter DNA. Interacts physically with RPA2/ROR1. In the ros1 mutants, an increase in methylation is observed in a number of gene promoters. Among the loci affected by ros1, a few (RD29A and At1g76930) are affected in cytosine methylation in all sequence contexts (CpG, CpNpG or CpNpN), although many others are affected primarily in non-CpG contexts. | O.I. | C.G. | S.X. | |
| 0.02 | 2e-7 | 59 | At4g34060 | 829552 | DML3 (DEMETER-LIKE PROTEIN 3) | Encodes a protein with 5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks. | O.I. | C.G. | S.X. | |
| 0.04 | 7e-4 | 48 | At3g10010 | 820162 | DML2 (DEMETER-LIKE 2) | Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks. | O.I. | C.G. | S.X. | |
| 0.01 | 4e-2 | 42 | At3g01175 | 820400 | - | F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMF | O.I. | C.G. | S.X. | |
| 0.01 | 7e-1 | 38 | At2g31510 | 817709 | IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) | F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MOFPV | O.I. | C.G. | S.X. | |
| 0.01 | 7e-1 | 38 | At1g12220 | 837775 | RPS5 (RESISTANT TO P. SYRINGAE 5) | Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB. | O.I. | C.G. | S.X. |
| HF | Ev | BS | Gene ID | Organism | Repr. ID | Gene Name | Functional Description | Ev | AGI code | Arabidopsis gene name | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.03 | 3e-19 | 99 | GmaAffx.6691.1.A1_at | Glycine max | AI442888 | - | - | 3e+0 | At5g41570 | WRKY24 | O.I. | C.G. | S.X. | |
| 0.12 | 4e-25 | 117 | Contig10908_at | Hordeum vulgare | Contig10908 | - | - | 4e-25 | At5g04560 | DME (DEMETER) | O.I. | C.G. | S.X. | |
| 0.14 | 4e-22 | 109 | Os01g0217900 | Oryza sativa | BI800881 | - | Transcriptional activator DEMETER (DNAglycosylase-related protein DME). Splice isoform 2 | 1e-22 | At5g04560 | DME (DEMETER) | O.I. | C.G. | S.X. | |
| 0.20 | 2e-44 | 182 | PtpAffx.207576.1.S1_s_at | Populus trichocarpa | pmrna15038 | hypothetical protein | - | 4e-45 | At5g04560 | DME (DEMETER) | O.I. | C.G. | S.X. | |
| 0.05 | 4e-2 | 42 | Ta.7331.1.S1_at | Triticum aestivum | BQ169679 | - | - | 2e-23 | At2g36490 | DML1 (DEMETER-LIKE 1) | O.I. | C.G. | S.X. | |
| 0.04 | 1e-5 | 52 | 1619627_at | Vitis vinifera | CB976213 | hypothetical protein LOC100257983 | - | 4e-6 | At5g04560 | DME (DEMETER) | O.I. | C.G. | S.X. | |
| 0.07 | 1e-15 | 85 | Zm.5328.1.S1_at | Zea mays | CD441067 | hypothetical protein LOC100280151 | - | 4e-40 | At2g36490 | DML1 (DEMETER-LIKE 1) | O.I. | C.G. | S.X. |
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