CoP: Co-expressed Biological Processes

Homology analysis

Gene ID At5g04460

Gene name protein binding / zinc ion binding

Functional description F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.	Other DB
0.01	3e-1	38	At4g20940	827842	leucine-rich repeat family protein	F:protein binding;P:signal transduction, N-terminal protein myristoylation;C:plasma membrane;PMOBFAV	O.I.	C.G.	S.X.
0.01	3e-1	38	At2g40030	818591	NRPD1B	Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing.	O.I.	C.G.	S.X.
0.00	1e+0	36	At5g40480	834046	EMB3012 (embryo defective 3012)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBP	O.I.	C.G.	S.X.
0.01	1e+0	36	At5g40380	834036	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	S.X.
0.01	1e+0	36	At2g47640	819377	small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative	F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPA	O.I.	C.G.	S.X.
0.01	1e+0	36	At1g68330	843162	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	S.X.
0.01	5e+0	34	At5g05700	830454	ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)	Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.	O.I.	C.G.	S.X.
0.01	5e+0	34	At5g23740	832439	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	Encodes a putative ribosomal protein S11 (RPS11-beta).	O.I.	C.G.	S.X.

Orthologous genes

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.08	2e-18	95	Gma.5426.1.S1_at	Glycine max	BI497927	-	-	3e-19	At5g04460	protein binding / zinc ion binding	O.I.	C.G.	S.X.
0.04	1e-11	71	Contig19803_at	Hordeum vulgare	Contig19803	-	-	6e-12	At5g04460	protein binding / zinc ion binding	O.I.	C.G.	S.X.
0.05	7e-10	67	Os09g0570500	Oryza sativa	AK069259.1	-	The start codon is not identified.	2e-10	At5g04460	protein binding / zinc ion binding	O.I.	C.G.	S.X.
0.23	7e-34	147	PtpAffx.133890.1.A1_at	Populus trichocarpa	CV257795	hypothetical protein	-	2e-34	At5g04460	protein binding / zinc ion binding	O.I.	C.G.	S.X.
0.03	9e-5	50	TaAffx.70088.1.S1_at	Triticum aestivum	BQ605972	-	-	5e-5	At5g04460	protein binding / zinc ion binding	O.I.	C.G.	S.X.
0.23	2e-30	133	1619736_at	Vitis vinifera	CF210461	hypothetical protein LOC100241098	-	3e-30	At5g04460	protein binding / zinc ion binding	O.I.	C.G.	S.X.
0.01	2e+0	34	Zm.18008.1.A1_at	Zea mays	BG841554	hypothetical protein LOC100192752	-	2e-2	At1g52560	26.5 kDa class I small heat shock protein-like (HSP26.5-P)	O.I.	C.G.	S.X.

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