Homology analysis

Gene ID At5g02310
Gene name PRT6 (PROTEOLYSIS 6)
Functional description Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.012e-450At4g23170828416EP1Induced in response to Salicylic acid.Similar to receptor-like kinase 4 and 5. NPR1, a known positive regulator of the SA signaling pathway is responsible for the SA-dependent induction and constitutive repression of EP1 gene's basal expression.O.I.C.G.S.X.
0.015e-242At4g23270828426protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.S.X.
0.012e-140At3g29830822699F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.S.X.
0.018e-138At5g25280832600serine-rich protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBO.I.C.G.S.X.
0.018e-138At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.041e-657GmaAffx.70987.1.S1_atGlycine maxAW201673--6e-8At5g02310PRT6 (PROTEOLYSIS 6)O.I.C.G.S.X.
0.012e+036Contig13435_atHordeum vulgareContig13435--4e-1At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.C.G.S.X.
0.047e-1275Os01g0148000Oryza sativaCB642477-Zn-finger (putative), N-recognin domain containingprotein3e-12At5g02310PRT6 (PROTEOLYSIS 6)O.I.C.G.S.X.
0.111e-1897PtpAffx.206243.1.S1_atPopulus trichocarpapmrna12386hypothetical protein-8e-19At5g02310PRT6 (PROTEOLYSIS 6)O.I.C.G.S.X.
0.015e-242Ta.7557.1.S1_atTriticum aestivumBT009526.1--4e-1At3g06600unknown proteinO.I.C.G.S.X.
0.019e-1361621724_atVitis viniferaCB341760--3e+0At5g25560zinc finger (C3HC4-type RING finger) family proteinO.I.C.G.S.X.
0.021e+036Zm.14433.1.S1_atZea maysCA401946hypothetical protein LOC100192707-2e+0At5g02310PRT6 (PROTEOLYSIS 6)O.I.C.G.S.X.



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