CoP: Co-expressed Biological Processes

Homology analysis

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.
0.09	2e-10	67	At5g63110	836431	HDA6 (HISTONE DEACETYLASE 6)	RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.	O.I.	C.G.	S.X.
0.09	8e-4	46	At5g35600	833525	HDA7 (histone deacetylase7)	F:histone deacetylase activity;P:histone deacetylation;C:nucleus;OBMFPA	O.I.	C.G.	S.X.
0.01	2e-1	38	At2g04160	814953	AIR3	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.	O.I.	C.G.	S.X.
0.01	7e-1	36	At5g41020	834104	myb family transcription factor	F:transcription factor activity, DNA binding;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	S.X.
0.02	7e-1	36	At4g01630	827983	ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	S.X.
0.01	7e-1	36	At4g28630	828981	ATM1 (ABC TRANSPORTER OF THE MITOCHONDRION)	half-molecule ABC transporter ATM1	O.I.	C.G.	S.X.
0.01	7e-1	36	At1g77620	844097	nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, nucleotide binding;P:DNA repair, cell cycle;C:nucleus;MFOAPV	O.I.	C.G.	S.X.
0.02	7e-1	36	At1g75050	843843	-	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV	O.I.	C.G.	S.X.

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.
0.27	5e-21	103	GmaAffx.75607.1.S1_at	Glycine max	AW308961	-	-	2e-21	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	C.G.	S.X.
0.40	4e-44	178	Contig5301_at	Hordeum vulgare	Contig5301	-	-	1e-43	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	C.G.	S.X.
0.42	3e-29	131	Os02g0215200	Oryza sativa	AF513383.1	-	Histone deacetylase (Fragment)	8e-29	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	C.G.	S.X.
0.56	2e-91	337	PtpAffx.6033.1.S1_at	Populus trichocarpa	CA932145	histone deacetylase	-	2e-91	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	C.G.	S.X.
0.34	6e-57	222	Ta.27150.1.S1_at	Triticum aestivum	CK162660	-	-	1e-56	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	C.G.	S.X.
0.19	7e-23	107	1617779_at	Vitis vinifera	CF404409	hypothetical protein LOC100241833	-	1e-22	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	C.G.	S.X.
0.38	3e-35	149	Zm.13633.1.A1_at	Zea mays	AY107370.1	hypothetical protein LOC100276617	-	1e-34	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	C.G.	S.X.

Gene ID	At4g38130
Gene name	HD1 (HISTONE DEACETYLASE 1)
Functional description	Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.