Homology analysis

Gene ID At4g38130
Functional description Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.092e-1067At5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.O.I.C.G.S.X.
0.098e-446At5g35600833525HDA7 (histone deacetylase7)F:histone deacetylase activity;P:histone deacetylation;C:nucleus;OBMFPAO.I.C.G.S.X.
0.012e-138At2g04160814953AIR3isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.O.I.C.G.S.X.
0.017e-136At5g41020834104myb family transcription factorF:transcription factor activity, DNA binding;P:unknown;C:unknown;MOFBPVAO.I.C.G.S.X.
0.027e-136At4g01630827983ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.S.X.
0.017e-136At4g28630828981ATM1 (ABC TRANSPORTER OF THE MITOCHONDRION)half-molecule ABC transporter ATM1O.I.C.G.S.X.
0.017e-136At1g77620844097nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, nucleotide binding;P:DNA repair, cell cycle;C:nucleus;MFOAPVO.I.C.G.S.X.
0.027e-136At1g75050843843-F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.275e-21103GmaAffx.75607.1.S1_atGlycine maxAW308961--2e-21At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.404e-44178Contig5301_atHordeum vulgareContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.423e-29131Os02g0215200Oryza sativaAF513383.1-Histone deacetylase (Fragment)8e-29At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.562e-91337PtpAffx.6033.1.S1_atPopulus trichocarpaCA932145histone deacetylase-2e-91At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.346e-57222Ta.27150.1.S1_atTriticum aestivumCK162660--1e-56At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.197e-231071617779_atVitis viniferaCF404409hypothetical protein LOC100241833-1e-22At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.383e-35149Zm.13633.1.A1_atZea maysAY107370.1hypothetical protein LOC100276617-1e-34At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.

Back to the CoP portal site

Back to the KAGIANA project homepage