Homology analysis

Gene ID At4g37930
Gene name SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)
Functional description Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.591e-141504At5g26780832736SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2)Encodes a protein with serine hydroxymethyltransferase activity which is thought to be localized in the mitochondrial matrix. SHM2 expression fails to rescue the conditional lethal phenotype of the shm1-1 mutant, defective in SHM1.O.I.C.G.S.X.
0.051e-552At4g13930827027SHM4 (serine hydroxymethyltransferase 4)Encodes a serine hydroxymethyltransferase maximally expressed in rootO.I.C.G.S.X.
0.015e-240At2g24210816955TPS10 (terpene synthase 10)F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;POO.I.C.G.S.X.
0.028e-136At5g66280836760GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1)GDP-D-mannose 4,6-dehydrataseO.I.C.G.S.X.
0.018e-136At4g33500829488protein phosphatase 2C-related / PP2C-relatedF:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:chloroplast;MOBFPAVO.I.C.G.S.X.
0.013e+034At5g18320831950armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;PFOMBVO.I.C.G.S.X.
0.023e+034At5g03370831859acylphosphatase familyF:acylphosphatase activity;P:biological_process unknown;C:unknown;BOMAPFO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.465e-114412Gma.7214.1.S1_atGlycine maxCD412786--3e-114At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)O.I.C.G.S.X.
0.575e-90331Contig1824_s_atHordeum vulgareContig1824--1e-89At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)O.I.C.G.S.X.
0.601e-109398Os03g0738400Oryza sativaAK119226.1-Serine hydroxymethyltransferase, mitochondrialprecursor (EC 2.1.2.1) (Serine methylase) (Glycinehydroxymethyltransferase) (SHMT)6e-110At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)O.I.C.G.S.X.
0.531e-114414PtpAffx.41585.1.S1_atPopulus trichocarpaCX660062precursor of transferase serine hydroxymethyltransferase 3-0At5g26780SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2)O.I.C.G.S.X.
0.478e-75282Ta.27135.1.S1_atTriticum aestivumBJ241323--1e-74At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)O.I.C.G.S.X.
0.6308171618636_atVitis viniferaCB976802hypothetical protein LOC100261289-0At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)O.I.C.G.S.X.
0.552e-58226Zm.4908.1.S1_atZea maysBG316794IDP527 protein-5e-58At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)O.I.C.G.S.X.



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