Homology analysis

Gene ID At4g35800
Gene name NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)
Functional description Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.021e-1173At5g60040836126NRPC1Encodes a subunit of RNA polymerase III (aka RNA polymerase C).O.I.C.G.S.X.
0.017e-448At3g57660824935NRPA1Encodes a subunit of RNA polymerase I (aka RNA polymerase A).O.I.C.G.S.X.
0.012e-140At1g14660838028ATNHX8member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification.O.I.C.G.S.X.
0.017e-138At3g15460820785brix domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.S.X.
0.017e-138At2g43650818967EMB2777 (EMBRYO DEFECTIVE 2777)F:molecular_function unknown;P:unknown;C:unknown;MOBFPVAO.I.C.G.S.X.
0.017e-138At1g47570841166zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVO.I.C.G.S.X.
0.017e-138At1g60890842381phosphatidylinositol-4-phosphate 5-kinase family proteinF:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:plasma membrane;OMBPFO.I.C.G.S.X.
0.017e-138At1g76130843945AMY2 (ALPHA-AMYLASE-LIKE 2)alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.113e-41173GmaAffx.73949.1.S1_atGlycine maxBG362762--4e-42At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)O.I.C.G.S.X.
0.165e-40167Contig6412_atHordeum vulgareContig6412--4e-40At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)O.I.C.G.S.X.
0.564e-121438OsAffx.18625.2.S1_atOryza sativa---0O.I.C.G.S.X.
0.7201017PtpAffx.225664.1.S1_atPopulus trichocarpapmrna45174--2e-174At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)O.I.C.G.S.X.
0.164e-1895TaAffx.128554.1.S1_s_atTriticum aestivumCD891797--1e-18At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)O.I.C.G.S.X.
0.053e-221071611810_atVitis viniferaCB981503similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase-1e-22At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)O.I.C.G.S.X.
0.338e-116418Zm.18044.1.S1_atZea maysAF519538.1RNA polymerase II largest subunit-2e-123At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)O.I.C.G.S.X.



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