CoP: Co-expressed Biological Processes

Homology analysis

Gene ID At4g29000

Gene name tesmin/TSO1-like CXC domain-containing protein

Functional description F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;OMPF

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.	Other DB
0.42	6e-147	521	At2g20110	816530	tesmin/TSO1-like CXC domain-containing protein	F:transcription factor activity;P:unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	S.X.
0.10	4e-12	73	At5g25790	832648	transcription factor	F:transcription factor activity;P:unknown;C:cellular_component unknown;OMPB	O.I.	C.G.	S.X.
0.01	1e-3	46	At1g43850	840981	SEU (seuss)	Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.	O.I.	C.G.	S.X.
0.02	1e-2	42	At5g66350	836767	SHI (SHORT INTERNODES)	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.	O.I.	C.G.	S.X.
0.02	6e-2	40	At3g26790	822293	FUS3 (FUSCA 3)	Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed.	O.I.	C.G.	S.X.
0.01	2e-1	38	At4g34260	829575	FUC95A	F:1,2-alpha-L-fucosidase activity;P:biological_process unknown;C:endomembrane system;BFOP	O.I.	C.G.	S.X.
0.01	2e-1	38	At3g19130	821447	ATRBP47B (RNA-binding protein 47B)	F:RNA binding;P:unknown;C:unknown;MOPFBAV	O.I.	C.G.	S.X.

Orthologous genes

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.25	3e-32	141	GmaAffx.74995.1.S1_at	Glycine max	BM086265	-	-	1e-32	At4g29000	tesmin/TSO1-like CXC domain-containing protein	O.I.	C.G.	S.X.
0.02	3e-2	40	HVSMEm0021J24r2_s_at	Hordeum vulgare	HVSMEm0021J24r2	-	-	5e+0	At5g64820	unknown protein	O.I.	C.G.	S.X.
0.10	8e-12	73	Os.26583.1.A1_at	Oryza sativa	-	-	-	0			O.I.	C.G.	S.X.
0.22	2e-24	115	PtpAffx.216985.1.S1_at	Populus trichocarpa	pmrna32077	hypothetical protein	-	1e-24	At4g29000	tesmin/TSO1-like CXC domain-containing protein	O.I.	C.G.	S.X.
0.09	5e-27	123	TaAffx.9387.1.S1_at	Triticum aestivum	BJ216452	-	-	2e-8	At5g25790	transcription factor	O.I.	C.G.	S.X.
0.02	3e-1	36	1612008_at	Vitis vinifera	CF604996	hypothetical protein LOC100243222	-	1e+0	At4g08790	nitrilase, putative	O.I.	C.G.	S.X.
0.02	3e-2	40	Zm.19317.1.S1_at	Zea mays	CO521190	tesmin/TSO1-like CXC domain containing protein	-	5e-2	At4g29000	tesmin/TSO1-like CXC domain-containing protein	O.I.	C.G.	S.X.

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