CoP: Co-expressed Biological Processes

Homology analysis

Gene ID At4g28450

Gene name nucleotide binding / protein binding

Functional description This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.	Other DB
0.02	4e-2	40	At3g20740	821622	FIE (FERTILIZATION-INDEPENDENT ENDOSPERM)	Encodes a protein similar to the transcriptional regular of the animal Polycomb group and is involved in regulation of establishment of anterior-posterior polar axis in the endosperm and repression of flowering during vegetative phase. Mutation leads endosperm to develop in the absence of fertilization and flowers to form in seedlings and non-reproductive organs. Also exhibits maternal effect gametophytic lethal phenotype, which is suppressed by hypomethylation. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF) and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. In the ovule, the FIE transcript levels increase transiently just after fertilization.	O.I.	C.G.	S.X.
0.02	7e-1	36	At3g12955	820481	auxin-responsive protein-related	F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P	O.I.	C.G.	S.X.
0.01	7e-1	36	At3g03740	821170	ATBPM4 (BTB-POZ and MATH domain 4)	F:protein binding;P:biological_process unknown;C:unknown;MPOFV	O.I.	C.G.	S.X.
0.02	7e-1	36	At2g16790	816180	shikimate kinase family protein	F:shikimate kinase activity, kinase activity, ATP binding;P:carbohydrate metabolic process;C:cellular_component unknown;BOFMPA	O.I.	C.G.	S.X.
0.02	7e-1	36	At1g09220	837442	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cytosolic ribosome;POMF	O.I.	C.G.	S.X.
0.01	3e+0	34	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	S.X.
0.01	3e+0	34	At5g51570	835231	band 7 family protein	F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole;BOPFMAV	O.I.	C.G.	S.X.
0.02	3e+0	34	At5g53190	835400	nodulin MtN3 family protein	F:unknown;P:biological_process unknown;C:integral to membrane, membrane;PMO	O.I.	C.G.	S.X.

Orthologous genes

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.16	4e-15	83	GmaAffx.13028.1.S1_at	Glycine max	BF071576	-	-	6e-16	At4g28450	nucleotide binding / protein binding	O.I.	C.G.	S.X.
0.16	4e-10	65	Contig1168_at	Hordeum vulgare	Contig1168	-	-	7e-10	At4g28450	nucleotide binding / protein binding	O.I.	C.G.	S.X.
0.28	1e-19	99	Os01g0238900	Oryza sativa	AK111838.1	-	WD40-like domain containing protein	2e-20	At4g28450	nucleotide binding / protein binding	O.I.	C.G.	S.X.
0.45	2e-75	284	PtpAffx.1010.1.S1_at	Populus trichocarpa	CK110579	hypothetical protein	-	1e-75	At4g28450	nucleotide binding / protein binding	O.I.	C.G.	S.X.
0.17	5e-11	69	TaAffx.92071.1.S1_at	Triticum aestivum	CA701894	-	-	2e-11	At4g28450	nucleotide binding / protein binding	O.I.	C.G.	S.X.
0.07	2e-10	65	1617969_at	Vitis vinifera	CB344991	hypothetical protein LOC100260774	-	3e-10	At4g28450	nucleotide binding / protein binding	O.I.	C.G.	S.X.
0.12	2e-8	59	Zm.17214.1.A1_at	Zea mays	AW054475	hypothetical protein LOC100273845	-	4e-8	At4g28450	nucleotide binding / protein binding	O.I.	C.G.	S.X.

Back to the CoP portal site

Back to the KAGIANA project homepage