Homology analysis

Gene ID At4g28450
Gene name nucleotide binding / protein binding
Functional description This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.024e-240At3g20740821622FIE (FERTILIZATION-INDEPENDENT ENDOSPERM)Encodes a protein similar to the transcriptional regular of the animal Polycomb group and is involved in regulation of establishment of anterior-posterior polar axis in the endosperm and repression of flowering during vegetative phase. Mutation leads endosperm to develop in the absence of fertilization and flowers to form in seedlings and non-reproductive organs. Also exhibits maternal effect gametophytic lethal phenotype, which is suppressed by hypomethylation. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF) and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. In the ovule, the FIE transcript levels increase transiently just after fertilization.O.I.C.G.S.X.
0.027e-136At3g12955820481auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;PO.I.C.G.S.X.
0.017e-136At3g03740821170ATBPM4 (BTB-POZ and MATH domain 4)F:protein binding;P:biological_process unknown;C:unknown;MPOFVO.I.C.G.S.X.
0.027e-136At2g16790816180shikimate kinase family proteinF:shikimate kinase activity, kinase activity, ATP binding;P:carbohydrate metabolic process;C:cellular_component unknown;BOFMPAO.I.C.G.S.X.
0.027e-136At1g09220837442pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cytosolic ribosome;POMFO.I.C.G.S.X.
0.013e+034At5g59520836071ZIP2encodes a metal ion transporter whose expression is regulated by copper.O.I.C.G.S.X.
0.013e+034At5g51570835231band 7 family proteinF:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole;BOPFMAVO.I.C.G.S.X.
0.023e+034At5g53190835400nodulin MtN3 family proteinF:unknown;P:biological_process unknown;C:integral to membrane, membrane;PMOO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.164e-1583GmaAffx.13028.1.S1_atGlycine maxBF071576--6e-16At4g28450nucleotide binding / protein bindingO.I.C.G.S.X.
0.164e-1065Contig1168_atHordeum vulgareContig1168--7e-10At4g28450nucleotide binding / protein bindingO.I.C.G.S.X.
0.281e-1999Os01g0238900Oryza sativaAK111838.1-WD40-like domain containing protein2e-20At4g28450nucleotide binding / protein bindingO.I.C.G.S.X.
0.452e-75284PtpAffx.1010.1.S1_atPopulus trichocarpaCK110579hypothetical protein-1e-75At4g28450nucleotide binding / protein bindingO.I.C.G.S.X.
0.175e-1169TaAffx.92071.1.S1_atTriticum aestivumCA701894--2e-11At4g28450nucleotide binding / protein bindingO.I.C.G.S.X.
0.072e-10651617969_atVitis viniferaCB344991hypothetical protein LOC100260774-3e-10At4g28450nucleotide binding / protein bindingO.I.C.G.S.X.
0.122e-859Zm.17214.1.A1_atZea maysAW054475hypothetical protein LOC100273845-4e-8At4g28450nucleotide binding / protein bindingO.I.C.G.S.X.

Back to the CoP portal site

Back to the KAGIANA project homepage