Homology analysis

Gene ID At4g24190
Gene name SHD (SHEPHERD)
Functional description encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat. Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.043e-757At5g52640835341ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.O.I.C.G.S.X.
0.011e-346At2g04030814930CR88Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR.O.I.C.G.S.X.
0.048e-240At5g56010835699HSP81-3a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl.O.I.C.G.S.X.
0.018e-240At5g56000835698heat shock protein 81-4 (HSP81-4)F:unfolded protein binding, ATP binding;P:protein folding;C:cytosol, apoplast, cell wall, nucleus, plasma membrane;OMBFPAVO.I.C.G.S.X.
0.018e-240At5g46100834651pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.C.G.S.X.
0.013e-138At5g26860832744LON1 (LON PROTEASE 1)Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.O.I.C.G.S.X.
0.013e-138At5g37320833706unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.475e-56220Gma.18032.1.S1_atGlycine maxBG650211--3e-56At4g24190SHD (SHEPHERD)O.I.C.G.S.X.
0.429e-68258Contig91_atHordeum vulgareContig91--2e-67At4g24190SHD (SHEPHERD)O.I.C.G.S.X.
0.383e-67258Os06g0716700Oryza sativaAK063385.1-Endoplasmin homolog precursor (GRP94 homolog)2e-67At4g24190SHD (SHEPHERD)O.I.C.G.S.X.
0.366e-96353PtpAffx.98826.1.S1_s_atPopulus trichocarpaCX653746hypothetical protein-2e-96At4g24190SHD (SHEPHERD)O.I.C.G.S.X.
0.414e-50200Ta.28735.1.S1_a_atTriticum aestivumBJ250459--5e-50At4g24190SHD (SHEPHERD)O.I.C.G.S.X.
0.244e-752821610896_atVitis viniferaCF204993.1hypothetical protein LOC100267648-4e-75At4g24190SHD (SHEPHERD)O.I.C.G.S.X.
0.411e-57224Zm.5048.3.S1_x_atZea maysAY103537.1hypothetical protein LOC100279926-3e-57At4g24190SHD (SHEPHERD)O.I.C.G.S.X.

Back to the CoP portal site

Back to the KAGIANA project homepage