Homology analysis

Gene ID At4g20380
Gene name zinc finger protein (LSD1)
Functional description LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.012e-240At5g04810830360pentatricopeptide (PPR) repeat-containing proteinF:nucleotide binding, nucleic acid binding;P:unknown;C:chloroplast;PMOFBVAO.I.C.G.S.X.
0.032e-240At5g13910831238LEP (LEAFY PETIOLE)Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination.O.I.C.G.S.X.
0.022e-240At4g29360829057glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane;PFOBO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.204e-756GmaAffx.86728.1.S1_atGlycine maxBI967919--3e-7At4g20380zinc finger protein (LSD1)O.I.C.G.S.X.
0.033e-238Contig9125_atHordeum vulgareContig9125--2e+0At1g72350MADS-box protein (AGL60)O.I.C.G.S.X.
0.124e-550Os03g0639600Oryza sativaAK111569.1-Zinc-finger protein Lsd14e-5At4g20380zinc finger protein (LSD1)O.I.C.G.S.X.
0.083e-1169PtpAffx.122847.1.S1_atPopulus trichocarpaBU895628hypothetical protein-4e-11At4g20380zinc finger protein (LSD1)O.I.C.G.S.X.
0.043e-136Ta.6181.3.S1_x_atTriticum aestivumBJ267492--2e-2At1g47970unknown proteinO.I.C.G.S.X.
0.122e-8571610475_atVitis viniferaCB979928hypothetical protein LOC100242577-1e-7At4g20380zinc finger protein (LSD1)O.I.C.G.S.X.
0.035e-134Zm.2581.1.A1_atZea maysBM078550--4e-1At4g15460glycine-rich proteinO.I.C.G.S.X.

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