Homology analysis

Gene ID At4g03190
Gene name GRH1 (GRR1-LIKE PROTEIN 1)
Functional description Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.147e-1479At3g62980825473TIR1 (TRANSPORT INHIBITOR RESPONSE 1)Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation.O.I.C.G.S.X.
0.034e-344At1g12820837838AFB3 (AUXIN SIGNALING F-BOX 3)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:cellular_component unknown;PMFOBO.I.C.G.S.X.
0.036e-240At3g26810822296AFB2 (AUXIN SIGNALING F-BOX 2)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:plasma membrane;PMOFBO.I.C.G.S.X.
0.012e-138At3g53290824496CYP71B30Pmissing N-term 80 AA not found between end of 71B5 and start of this sequence probably a pseudogene, from http://drnelson.utmem.edu/biblioD.htmlO.I.C.G.S.X.
0.019e-136At5g57345835840unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.S.X.
0.019e-136At4g34340829584TAF8 (TBP-ASSOCIATED FACTOR 8)F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.S.X.
0.019e-136At3g07810819972heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MBOPFVAO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.072e-1481Gma.1557.1.S1_a_atGlycine maxBE823244--7e-21At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)O.I.C.G.S.X.
0.032e+034Contig10247_atHordeum vulgareContig10247--2e-8At5g49980AFB5 (Auxin F-Box protein 5)O.I.C.G.S.X.
0.045e-757Os.10149.1.S1_atOryza sativa---0O.I.C.G.S.X.
0.079e-1479PtpAffx.102029.1.A1_atPopulus trichocarpaCV240650--4e-35At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)O.I.C.G.S.X.
0.036e-859Ta.23215.1.S1_atTriticum aestivumCD452856--1e-10At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)O.I.C.G.S.X.
0.037e-5481618982_atVitis viniferaCF413816hypothetical protein LOC100264085-2e-2At1g29390COR314-TM2O.I.C.G.S.X.
0.042e-963Zm.17222.1.A1_atZea maysCK144311--2e-13At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)O.I.C.G.S.X.



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