Homology analysis

Gene ID At4g03070
Gene name AOP1
Functional description Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally. In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.312e-1273At4g03050828104AOP3Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.O.I.C.G.S.X.
0.298e-652At1g528208417152-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity;P:unknown;C:unknown;POBFMO.I.C.G.S.X.
0.055e-446At4g03060828102AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.O.I.C.G.S.X.
0.011e-138At2g35340818101MEE29 (maternal effect embryo arrest 29)F:helicase activity, ATP-dependent RNA helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBFVPAO.I.C.G.S.X.
0.101e-138At1g528108417142-oxoglutarate-dependent dioxygenase-relatedF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.S.X.
0.015e-136At3g20440821589alpha-amylase/ catalytic/ cation bindingF:cation binding, catalytic activity, alpha-amylase activity;P:embryonic development ending in seed dormancy, carbohydrate metabolic process;C:chloroplast;BPOMFAO.I.C.G.S.X.
0.032e+034At5g38790833870unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFO.I.C.G.S.X.
0.012e+034At5g22010832261AtRFC1 (replication factor C 1)F:DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication;C:DNA replication factor C complex, intracellular;BOMFAPVO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.023e+034GmaAffx.45530.1.S1_atGlycine maxBG789917--5e-2At1g27890CCR4-NOT transcription complex protein, putativeO.I.C.G.S.X.
0.029e-134Contig17590_atHordeum vulgareContig17590--7e-9At5g28050cytidine/deoxycytidylate deaminase family proteinO.I.C.G.S.X.
0.026e-240Os01g0209400Oryza sativaAK103702.1-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein2e-17At3g14450CID9 (CTC-Interacting Domain 9)O.I.C.G.S.X.
0.042e-138PtpAffx.200510.1.S1_atPopulus trichocarpapmrna10322-oxoglutarate-dependent dioxygenase-2e-6At1g528202-oxoglutarate-dependent dioxygenase, putativeO.I.C.G.S.X.
0.038e+032TaAffx.28281.1.S1_atTriticum aestivumCA662305--1e+0At5g0296040S ribosomal protein S23 (RPS23B)O.I.C.G.S.X.
0.036e-1341619131_atVitis viniferaCB973000--1e+0At4g03070AOP1O.I.C.G.S.X.
0.033e+032ZmAffx.357.1.A1_atZea maysAI670544--6e-1At5g67070RALFL34 (ralf-like 34)O.I.C.G.S.X.



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