Homology analysis

Gene ID At3g62980
Gene name TIR1 (TRANSPORT INHIBITOR RESPONSE 1)
Functional description Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.147e-1479At4g03190828045GRH1 (GRR1-LIKE PROTEIN 1)Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.O.I.C.G.S.X.
0.082e-552At3g26810822296AFB2 (AUXIN SIGNALING F-BOX 2)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:plasma membrane;PMOFBO.I.C.G.S.X.
0.092e-552At1g12820837838AFB3 (AUXIN SIGNALING F-BOX 3)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:cellular_component unknown;PMFOBO.I.C.G.S.X.
0.019e-136At5g45510834587leucine-rich repeat family proteinF:protein binding;P:unknown;C:cytosol;MOPBFVAO.I.C.G.S.X.
0.019e-136At3g12700820452aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFOO.I.C.G.S.X.
0.014e+034At5g0950083080940S ribosomal protein S15 (RPS15C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAFO.I.C.G.S.X.
0.024e+034At5g49980835062AFB5 (Auxin F-Box protein 5)F:ubiquitin-protein ligase activity;P:unknown;C:unknown;PMOFO.I.C.G.S.X.
0.014e+034At5g52190835295sugar isomerase (SIS) domain-containing proteinF:sugar binding;P:carbohydrate metabolic process;C:unknown;BAOPO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.147e-24113GmaAffx.36982.1.S1_atGlycine maxBM092957--1e-24At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)O.I.C.G.S.X.
0.079e-1891Contig7409_atHordeum vulgareContig7409--2e-17At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)O.I.C.G.S.X.
0.055e-1067Os05g0150500Oryza sativaAK121600.1-Cyclin-like F-box domain containing protein7e-10At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)O.I.C.G.S.X.
0.161e-34149PtpAffx.102029.1.A1_atPopulus trichocarpaCV240650--4e-35At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)O.I.C.G.S.X.
0.053e-1067Ta.23215.1.S1_atTriticum aestivumCD452856--1e-10At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)O.I.C.G.S.X.
0.032e-11691618982_atVitis viniferaCF413816hypothetical protein LOC100264085-2e-2At1g29390COR314-TM2O.I.C.G.S.X.
0.071e-1377Zm.17222.1.A1_atZea maysCK144311--2e-13At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)O.I.C.G.S.X.



Back to the CoP portal site

Back to the KAGIANA project homepage