CoP: Co-expressed Biological Processes

Homology analysis

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.
0.01	5e-1	36	At3g08670	820014	unknown protein	F:unknown;P:response to oxidative stress;C:unknown;MFOBPVA	O.I.	C.G.	S.X.
0.02	5e-1	36	At2g15695	816063	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	S.X.
0.02	2e+0	34	At5g59616	836082	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	S.X.
0.02	2e+0	34	At5g28823	832999	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPBOM	O.I.	C.G.	S.X.
0.01	2e+0	34	At5g63620	836482	oxidoreductase, zinc-binding dehydrogenase family protein	F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV	O.I.	C.G.	S.X.
0.01	2e+0	34	At3g54540	824619	ATGCN4	member of GCN subfamily	O.I.	C.G.	S.X.
0.01	2e+0	34	At3g48430	824002	REF6 (RELATIVE OF EARLY FLOWERING 6)	Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.	O.I.	C.G.	S.X.

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.
0.15	7e-7	56	GmaAffx.56889.1.S1_s_at	Glycine max	AW781023	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	C.G.	S.X.
0.04	6e-5	48	Contig12731_at	Hordeum vulgare	Contig12731	-	-	2e-4	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	C.G.	S.X.
0.14	1e-3	46	Os09g0514400	Oryza sativa	AK060892.1	-	Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alphasubunit) (Ras proteins prenyltransferase alpha)(FTase-alpha) (Type I protein geranyl-geranyltransferasealpha subunit) (GGTase-I-alpha)	7e-4	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	C.G.	S.X.
0.22	8e-19	95	PtpAffx.61544.1.A1_at	Populus trichocarpa	CA931045	hypothetical protein	-	4e-19	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	C.G.	S.X.
0.03	2e+0	34	Ta.13125.1.S1_at	Triticum aestivum	CD490995	-	-	2e+0	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	C.G.	S.X.
0.02	1e-1	36	1614685_at	Vitis vinifera	CF515859	hypothetical protein LOC100264962	-	2e-18	At5g02280	synbindin, putative	O.I.	C.G.	S.X.
0.02	3e+0	32	Zm.16342.1.S1_at	Zea mays	CO526291	-	-	5e-7	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	O.I.	C.G.	S.X.

Gene ID	At3g59380
Gene name	FTA (FARNESYLTRANSFERASE A)
Functional description	Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1.