Homology analysis

Gene ID At3g57300
Gene name INO80 (INO80 ORTHOLOG)
Functional description Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.012e-346At5g18620831980CHR17 (CHROMATIN REMODELING FACTOR17)F:in 7 functions;P:ATP-dependent chromatin remodeling, chromatin remodeling;C:nucleus, chromatin remodeling complex;MOFBPVAO.I.C.G.S.X.
0.019e-344At3g09840820142CDC48 (CELL DIVISION CYCLE 48)Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.O.I.C.G.S.X.
0.014e-242At3g06010819772ATCHR12Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.O.I.C.G.S.X.
0.011e-140At5g05130830395SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 7 functions;P:unknown;C:unknown;MOBFPVAO.I.C.G.S.X.
0.021e-140At5g66750836808CHR1 (CHROMATIN REMODELING 1)Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation.O.I.C.G.S.X.
0.011e-140At3g51080824272zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFMOO.I.C.G.S.X.
0.016e-138At3g06400819814CHR11 (CHROMATIN-REMODELING PROTEIN 11)Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature.O.I.C.G.S.X.
0.016e-138At3g22520821823unknown proteinF:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast, chloroplast envelope;OMBFPAO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.012e-450PsAffx.C71000035_atGlycine maxPsAffx.C71000035--1e-2At3g49470NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)O.I.C.G.S.X.
0.014e+034Contig12840_atHordeum vulgareContig12840--1e-24At2g21470SAE2 (SUMO-ACTIVATING ENZYME 2)O.I.C.G.S.X.
0.027e-242Os05g0144300Oryza sativaAK068173.1-Type III restriction enzyme, res subunit familyprotein2e-28At3g06010ATCHR12O.I.C.G.S.X.
0.356e-119430PtpAffx.213287.1.S1_atPopulus trichocarpapmrna25982chromatin remodeling complex subunit-4e-119At3g57300INO80 (INO80 ORTHOLOG)O.I.C.G.S.X.
0.022e-450Ta.4945.1.S1_atTriticum aestivumCD901138--1e-4At3g57300INO80 (INO80 ORTHOLOG)O.I.C.G.S.X.
0.017e-1361622058_atVitis viniferaCB836542--6e+0At5g26594ARR24 (Arabidopsis response regulator 24)O.I.C.G.S.X.
0.012e-138Zm.4117.2.A1_atZea maysCF055184--6e-1At4g35420dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase familyO.I.C.G.S.X.

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