Homology analysis

Gene ID At3g42670
Gene name CHR38 (CHROMATIN REMODELING 38)
Functional description Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.6201148At5g20420832164CHR42 (chromatin remodeling 42)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;MFBOPAVO.I.C.G.S.X.
0.018e-344At1g05490837051chr31 (chromatin remodeling 31)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:unknown;MOBFPVAO.I.C.G.S.X.
0.013e-242At5g40150834012peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.S.X.
0.013e-242At1g50830841505unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFABO.I.C.G.S.X.
0.011e-140At5g18570831975GTP1/OBG family proteinF:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPVO.I.C.G.S.X.
0.011e-140At3g58050824974unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.S.X.
0.011e-140At3g12270820407PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPAO.I.C.G.S.X.
0.011e-140At2g41960818796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.C.G.S.X.
0.011e-140At1g48620841283HON5 (High Mobility Group Family A 5)This gene is predicted to encodes a histone H1/H5 family member. A plant line expressing an RNAi construct targeted against HON5 shows a reduced level of agrobacterium-mediated root transformation.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.014e-242PsAffx.C25000108_atGlycine maxPsAffx.C25000108--2e+0At2g34320nucleic acid bindingO.I.C.G.S.X.
0.012e-138Contig25897_atHordeum vulgareContig25897--3e-1At4g18070unknown proteinO.I.C.G.S.X.
0.011e-244Os03g0108400Oryza sativaBX900155-Snf7 family protein4e-3At3g45000VPS24.2O.I.C.G.S.X.
0.216e-23111PtpAffx.207785.1.S1_atPopulus trichocarpapmrna15477chromatin remodeling complex subunit-2e-23At3g42670CHR38 (CHROMATIN REMODELING 38)O.I.C.G.S.X.
0.013e-242TaAffx.128624.1.S1_x_atTriticum aestivumCA695587--3e-21At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)O.I.C.G.S.X.
0.011e-1381618438_atVitis viniferaCF204732.1--2e+0At1g29060-O.I.C.G.S.X.
0.018e-136Zm.4711.1.S1_atZea maysAY107508.1--1e+1At5g54990zinc finger (C3HC4-type RING finger) family proteinO.I.C.G.S.X.



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