CoP: Co-expressed Biological Processes

Homology analysis

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.
0.02	2e-2	40	At5g48800	834938	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;P	O.I.	C.G.	S.X.
0.02	3e-1	36	At4g00980	827935	zinc knuckle (CCHC-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	C.G.	S.X.
0.02	3e-1	36	At3g29200	822573	CM1 (CHORISMATE MUTASE 1)	L-ascorbate peroxidase	O.I.	C.G.	S.X.
0.02	3e-1	36	At1g30280	839908	heat shock protein binding	F:heat shock protein binding;P:unknown;C:cellular_component unknown;MOFPVB	O.I.	C.G.	S.X.
0.01	3e-1	36	At1g16130	838182	WAKL2 (wall associated kinase-like 2)	wall-associated kinase like	O.I.	C.G.	S.X.
0.01	1e+0	34	At5g15300	831382	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	S.X.
0.02	1e+0	34	At5g64060	836527	anac103 (Arabidopsis NAC domain containing protein 103)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	S.X.
0.01	1e+0	34	At5g18360	831954	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAV	O.I.	C.G.	S.X.

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.
0.05	1e-1	38	GmaAffx.11078.1.S1_at	Glycine max	CA938779	-	-	1e-2	At5g53486	unknown protein	O.I.	C.G.	S.X.
0.03	1e-2	40	Contig13170_s_at	Hordeum vulgare	Contig13170	-	-	3e-1	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	C.G.	S.X.
0.04	1e-2	42	Os05g0299100	Oryza sativa	9633.m02074	-	Hypothetical protein	4e-3	At3g25070	RIN4 (RPM1 INTERACTING PROTEIN 4)	O.I.	C.G.	S.X.
0.11	1e-7	57	Ptp.7016.1.S1_at	Populus trichocarpa	AJ767112	hypothetical protein	-	1e-7	At3g25070	RIN4 (RPM1 INTERACTING PROTEIN 4)	O.I.	C.G.	S.X.
0.04	3e-1	36	Ta.3957.3.S1_at	Triticum aestivum	BJ269306	Dehydration-induced protein	-	1e+0	At4g34270	TIP41-like family protein	O.I.	C.G.	S.X.
0.04	1e+0	32	1612068_at	Vitis vinifera	CF405105	-	-	2e-16	At5g62690	TUB2	O.I.	C.G.	S.X.
0.03	1e-1	36	Zm.15253.1.A1_at	Zea mays	BM351647	-	-	3e-1	At1g17970	zinc finger (C3HC4-type RING finger) family protein	O.I.	C.G.	S.X.

Gene ID	At3g25070
Gene name	RIN4 (RPM1 INTERACTING PROTEIN 4)
Functional description	Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is 'guarded' by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation.