Homology analysis

Gene ID At3g24495
Gene name MSH7 (MUTS HOMOLOG 7)
Functional description encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2*MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.014e-138At4g01010826427ATCNGC13member of Cyclic nucleotide gated channel familyO.I.C.G.S.X.
0.014e-138At4g16970827405ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.C.G.S.X.
0.012e+036At5g60640836185ATPDIL1-4 (PDI-LIKE 1-4)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.O.I.C.G.S.X.
0.012e+036At4g02070828147MSH6 (MUTS HOMOLOG 6)encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.O.I.C.G.S.X.
0.012e+036At4g25610828666zinc finger (C2H2 type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;OMFBPVO.I.C.G.S.X.
0.012e+036At2g35800818153mitochondrial substrate carrier family proteinF:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, chloroplast envelope;MFPOO.I.C.G.S.X.
0.012e+036At2g37140818290terpene synthase/cyclase-relatedF:lyase activity, magnesium ion binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.S.X.
0.012e+036At1g75450843881CKX5 (CYTOKININ OXIDASE 5)This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.014e-242GmaAffx.31335.1.S1_atGlycine maxBF070317--3e+0At4g28330unknown proteinO.I.C.G.S.X.
0.012e-138Contig25082_atHordeum vulgareContig25082--4e+0At1g27650ATU2AF35AO.I.C.G.S.X.
0.097e-23111Os01g0180600Oryza sativaNM_189554.1-MutS homolog 7 (Fragment)1e-10At3g24495MSH7 (MUTS HOMOLOG 7)O.I.C.G.S.X.
0.272e-40169PtpAffx.216978.1.S1_atPopulus trichocarpapmrna32066hypothetical protein-2e-40At3g24495MSH7 (MUTS HOMOLOG 7)O.I.C.G.S.X.
0.121e-26123Ta.3678.1.S1_atTriticum aestivumAF354709.1MutS homolog 7-1e-26At3g24495MSH7 (MUTS HOMOLOG 7)O.I.C.G.S.X.
0.015e-1361613087_atVitis viniferaCB838072--9e-2At1g43330myb family protein-relatedO.I.C.G.S.X.
0.049e-1995Zm.216.1.S1_atZea maysAJ238787.1MutS homolog2-2e-18At3g24495MSH7 (MUTS HOMOLOG 7)O.I.C.G.S.X.

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