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| Gene ID | At3g21240 |
| Gene name | 4CL2 (4-COUMARATE:COA LIGASE 2) |
| Functional description | encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate. |
| HF | Ev | BS | Gene ID | Repr. ID | Gene Name | Functional Description | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|
| 0.71 | 0 | 694 | At1g51680 | 841593 | 4CL1 (4-COUMARATE:COA LIGASE 1) | encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate. | O.I. | C.G. | S.X. | |
| 0.08 | 2e-14 | 81 | At1g65060 | 842814 | 4CL3 | encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate. | O.I. | C.G. | S.X. | |
| 0.17 | 3e-6 | 54 | At3g21230 | 821677 | 4CL5 (4-coumarate:CoA ligase 5) | The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo. | O.I. | C.G. | S.X. | |
| 0.03 | 2e-4 | 48 | At1g20510 | 838639 | OPCL1 (OPC-8:0 COA LIGASE1) | F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAV | O.I. | C.G. | S.X. | |
| 0.04 | 3e-3 | 44 | At4g05160 | 825864 | 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative | Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. | O.I. | C.G. | S.X. |
| HF | Ev | BS | Gene ID | Organism | Repr. ID | Gene Name | Functional Description | Ev | AGI code | Arabidopsis gene name | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.14 | 5e-9 | 63 | Gma.8472.1.S1_at | Glycine max | BI942098 | 4-coumarate:Coenzyme A ligase isoenzyme 4 | - | 2e-8 | At1g51680 | 4CL1 (4-COUMARATE:COA LIGASE 1) | O.I. | C.G. | S.X. | |
| 0.07 | 1e-10 | 67 | Contig15844_at | Hordeum vulgare | Contig15844 | - | - | 2e-10 | At3g21240 | 4CL2 (4-COUMARATE:COA LIGASE 2) | O.I. | C.G. | S.X. | |
| 0.09 | 2e-6 | 56 | Os08g0448000 | Oryza sativa | AK120964.1 | - | 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment) | 1e-6 | At3g21240 | 4CL2 (4-COUMARATE:COA LIGASE 2) | O.I. | C.G. | S.X. | |
| 0.17 | 3e-7 | 57 | Ptp.3043.1.S1_at | Populus trichocarpa | AF041049.1 | 4-Coumarate:CoA ligase | - | 3e-13 | At1g51680 | 4CL1 (4-COUMARATE:COA LIGASE 1) | O.I. | C.G. | S.X. | |
| 0.06 | 2e-4 | 48 | TaAffx.30205.2.S1_s_at | Triticum aestivum | CA627137 | - | - | 1e-4 | At3g21240 | 4CL2 (4-COUMARATE:COA LIGASE 2) | O.I. | C.G. | S.X. | |
| 0.22 | 7e-17 | 87 | 1609307_at | Vitis vinifera | CD715818 | hypothetical protein LOC100254698 | - | 3e-16 | At3g21240 | 4CL2 (4-COUMARATE:COA LIGASE 2) | O.I. | C.G. | S.X. | |
| 0.03 | 6e-6 | 52 | Zm.1390.1.A1_at | Zea mays | AY106966.1 | - | - | 3e-3 | At3g21230 | 4CL5 (4-coumarate:CoA ligase 5) | O.I. | C.G. | S.X. |
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