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| Gene ID | At3g20670 |
| Gene name | HTA13 |
| Functional description | Encodes HTA13, a histone H2A protein. |
| HF | Ev | BS | Gene ID | Repr. ID | Gene Name | Functional Description | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|
| 0.81 | 1e-113 | 408 | At1g51060 | 841528 | HTA10 | Encodes HTA10, a histone H2A protein. | O.I. | C.G. | S.X. | |
| 0.68 | 4e-70 | 264 | At5g54640 | 835553 | RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) | Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein. | O.I. | C.G. | S.X. | |
| 0.62 | 6e-54 | 210 | At4g27230 | 828831 | HTA2 (histone H2A) | Encodes HTA2, a histone H2A protein. | O.I. | C.G. | S.X. | |
| 0.44 | 2e-41 | 169 | At1g54690 | 841910 | GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX) | Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10–20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. | O.I. | C.G. | S.X. | |
| 0.39 | 1e-27 | 123 | At1g08880 | 837409 | H2AXA | Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10–20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. | O.I. | C.G. | S.X. | |
| 0.30 | 9e-13 | 73 | At5g27670 | 832829 | HTA7 (HISTONE H2A 7) | Encodes HTA7, a histone H2A protein. | O.I. | C.G. | S.X. | |
| 0.21 | 1e-8 | 59 | At5g59870 | 836109 | HTA6 | Encodes HTA6, a histone H2A protein. | O.I. | C.G. | S.X. | |
| 0.03 | 2e-1 | 36 | At5g25810 | 832650 | tny (TINY) | encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis. | O.I. | C.G. | S.X. | |
| 0.02 | 8e-1 | 34 | At5g58690 | 835983 | phosphoinositide-specific phospholipase C family protein | F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOP | O.I. | C.G. | S.X. |
| HF | Ev | BS | Gene ID | Organism | Repr. ID | Gene Name | Functional Description | Ev | AGI code | Arabidopsis gene name | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.53 | 1e-52 | 206 | Gma.17619.1.S1_at | Glycine max | CD405083 | - | - | 2e-52 | At3g20670 | HTA13 | O.I. | C.G. | S.X. | |
| 0.23 | 2e-12 | 71 | HVSMEk0018M19r2_at | Hordeum vulgare | HVSMEk0018M19r2 | - | - | 6e-18 | At4g27230 | HTA2 (histone H2A) | O.I. | C.G. | S.X. | |
| 0.20 | 2e-9 | 63 | Os12g0438000 | Oryza sativa | AK071511.1 | - | Histone H2A | 1e-4 | At5g54640 | RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) | O.I. | C.G. | S.X. | |
| 0.44 | 8e-17 | 87 | PtpAffx.58805.1.A1_s_at | Populus trichocarpa | CK319251 | histone H2 | - | 1e-16 | At3g20670 | HTA13 | O.I. | C.G. | S.X. | |
| 0.23 | 2e-7 | 56 | Ta.6538.2.S1_at | Triticum aestivum | CK214714 | - | - | 5e-9 | At4g27230 | HTA2 (histone H2A) | O.I. | C.G. | S.X. | |
| 0.39 | 7e-17 | 85 | 1622008_at | Vitis vinifera | CB973055 | hypothetical protein LOC100251194 | - | 1e-25 | At1g51060 | HTA10 | O.I. | C.G. | S.X. | |
| 0.18 | 4e-19 | 93 | Zm.4862.1.S1_a_at | Zea mays | CF629721 | hypothetical protein LOC100273666 | - | 2e-27 | At4g27230 | HTA2 (histone H2A) | O.I. | C.G. | S.X. |
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