Homology analysis

Gene ID At3g20670
Gene name HTA13
Functional description Encodes HTA13, a histone H2A protein.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.811e-113408At1g51060841528HTA10Encodes HTA10, a histone H2A protein.O.I.C.G.S.X.
0.684e-70264At5g54640835553RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein.O.I.C.G.S.X.
0.626e-54210At4g27230828831HTA2 (histone H2A)Encodes HTA2, a histone H2A protein.O.I.C.G.S.X.
0.442e-41169At1g54690841910GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.O.I.C.G.S.X.
0.391e-27123At1g08880837409H2AXAEncodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.O.I.C.G.S.X.
0.309e-1373At5g27670832829HTA7 (HISTONE H2A 7)Encodes HTA7, a histone H2A protein.O.I.C.G.S.X.
0.211e-859At5g59870836109HTA6Encodes HTA6, a histone H2A protein.O.I.C.G.S.X.
0.032e-136At5g25810832650tny (TINY)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.O.I.C.G.S.X.
0.028e-134At5g58690835983phosphoinositide-specific phospholipase C family proteinF:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOPO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.531e-52206Gma.17619.1.S1_atGlycine maxCD405083--2e-52At3g20670HTA13O.I.C.G.S.X.
0.232e-1271HVSMEk0018M19r2_atHordeum vulgareHVSMEk0018M19r2--6e-18At4g27230HTA2 (histone H2A)O.I.C.G.S.X.
0.202e-963Os12g0438000Oryza sativaAK071511.1-Histone H2A1e-4At5g54640RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)O.I.C.G.S.X.
0.448e-1787PtpAffx.58805.1.A1_s_atPopulus trichocarpaCK319251histone H2-1e-16At3g20670HTA13O.I.C.G.S.X.
0.232e-756Ta.6538.2.S1_atTriticum aestivumCK214714--5e-9At4g27230HTA2 (histone H2A)O.I.C.G.S.X.
0.397e-17851622008_atVitis viniferaCB973055hypothetical protein LOC100251194-1e-25At1g51060HTA10O.I.C.G.S.X.
0.184e-1993Zm.4862.1.S1_a_atZea maysCF629721hypothetical protein LOC100273666-2e-27At4g27230HTA2 (histone H2A)O.I.C.G.S.X.



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