Homology analysis

Gene ID At3g20475
Functional description Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.018e-240At4g15230827187PDR2 (PLEIOTROPIC DRUG RESISTANCE 2)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPVO.I.C.G.S.X.
0.013e-138At5g66420836774-F:unknown;P:unknown;C:cellular_component unknown;BOFPAO.I.C.G.S.X.
0.023e-138At4g253866240268unknown proteinF:unknown;P:unknown;C:unknownO.I.C.G.S.X.
0.013e-138At4g11270826729transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cytosol;MFBOPO.I.C.G.S.X.
0.011e+036At5g49770835040leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.S.X.
0.011e+036At4g13460826978SUVH9Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.045e-757GmaAffx.38562.1.A1_atGlycine maxCD408685--5e-8At3g20475MSH5 (MUTS-HOMOLOGUE 5)O.I.C.G.S.X.
0.014e-240Contig17841_atHordeum vulgareContig17841--2e+0At4g23570SGT1AO.I.C.G.S.X.
0.181e-1173Os05g0498300Oryza sativaAK101127.1-MutS III domain containing protein7e-12At3g20475MSH5 (MUTS-HOMOLOGUE 5)O.I.C.G.S.X.
0.313e-45184PtpAffx.209827.1.S1_atPopulus trichocarpapmrna19371hypothetical protein-1e-45At3g20475MSH5 (MUTS-HOMOLOGUE 5)O.I.C.G.S.X.
0.112e-552Ta.7253.2.S1_atTriticum aestivumBJ268297--5e-6At3g20475MSH5 (MUTS-HOMOLOGUE 5)O.I.C.G.S.X.
0.011e+0341620293_atVitis viniferaCF202444.1--4e-7At5g24090acidic endochitinase (CHIB1)O.I.C.G.S.X.
0.018e-342Zm.1418.1.A1_atZea maysBI992962hypothetical protein LOC100272790-2e+0At5g46300unknown proteinO.I.C.G.S.X.

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