CoP: Co-expressed Biological Processes

Homology analysis

Gene ID At3g15290

Gene name 3-hydroxybutyryl-CoA dehydrogenase, putative

Functional description F:coenzyme binding, oxidoreductase activity, 3-hydroxybutyryl-CoA dehydrogenase activity, binding, catalytic activity;P:fatty acid metabolic process, metabolic process;C:peroxisome;BOMAFP

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.	Other DB
0.02	7e-3	42	At1g53750	841812	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,	O.I.	C.G.	S.X.
0.02	3e-2	40	At1g53780	841815	ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding / peptidyl-prolyl cis-trans isomerase	F:in 6 functions;P:protein catabolic process;C:membrane;OBMFPAV	O.I.	C.G.	S.X.
0.02	4e-1	36	At5g63720	836492	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOFPV	O.I.	C.G.	S.X.
0.01	4e-1	36	At4g13650	826999	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	S.X.
0.02	4e-1	36	At3g10190	820181	calmodulin, putative	F:calcium ion binding;P:biological_process unknown;C:plasma membrane;MPFOB	O.I.	C.G.	S.X.
0.01	2e+0	34	At5g51920	835267	catalytic/ pyridoxal phosphate binding	F:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:chloroplast;BOPMFA	O.I.	C.G.	S.X.
0.01	2e+0	34	At5g55300	835623	TOP1ALPHA (DNA TOPOISOMERASE I ALPHA)	Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition.	O.I.	C.G.	S.X.
0.01	2e+0	34	At5g07850	830678	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	S.X.
0.01	2e+0	34	At4g12250	826833	GAE5 (UDP-D-GLUCURONATE 4-EPIMERASE 5)	UDP-D-glucuronate 4-epimerase	O.I.	C.G.	S.X.

Orthologous genes

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.14	1e-8	61	GmaAffx.8642.1.S1_at	Glycine max	BU545035	Peroxisomal 3-hydroxyacyl-CoA dehydrogenase-like protein	-	1e-8	At3g15290	3-hydroxybutyryl-CoA dehydrogenase, putative	O.I.	C.G.	S.X.
0.11	2e-7	56	Contig9424_at	Hordeum vulgare	Contig9424	-	-	1e-6	At3g15290	3-hydroxybutyryl-CoA dehydrogenase, putative	O.I.	C.G.	S.X.
0.14	2e-11	71	Os01g0796400	Oryza sativa	AK060287.1	-	-	2e-11	At3g15290	3-hydroxybutyryl-CoA dehydrogenase, putative	O.I.	C.G.	S.X.
0.13	2e-13	77	PtpAffx.3129.1.S1_at	Populus trichocarpa	DN493141	-	-	1e-13	At3g15290	3-hydroxybutyryl-CoA dehydrogenase, putative	O.I.	C.G.	S.X.
0.09	3e-8	59	Ta.10542.1.S1_a_at	Triticum aestivum	CD888399	-	-	4e-8	At3g15290	3-hydroxybutyryl-CoA dehydrogenase, putative	O.I.	C.G.	S.X.
0.15	2e-22	105	1622434_at	Vitis vinifera	CD801978	hypothetical protein LOC100246999	-	6e-22	At3g15290	3-hydroxybutyryl-CoA dehydrogenase, putative	O.I.	C.G.	S.X.
0.06	8e-4	44	Zm.12854.1.A1_at	Zea mays	CA400433	hypothetical protein LOC100191282	-	3e-3	At3g15290	3-hydroxybutyryl-CoA dehydrogenase, putative	O.I.	C.G.	S.X.

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