CoP: Co-expressed Biological Processes

Homology analysis

Gene ID At3g05280

Gene name integral membrane Yip1 family protein

Functional description F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.	Other DB
0.81	0	704	At5g27490	832808	integral membrane Yip1 family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP	O.I.	C.G.	S.X.
0.01	1e-1	38	At3g11440	820317	MYB65 (MYB DOMAIN PROTEIN 65)	Member of the R2R3-MYB gene family. Similar to GA-induced Barley myb gene. May be induced during germination in response to GA. Double mutants with MYB33 are male sterile, showing defects in pollen development and anther development. Contains a binding site for miRNA159 and may be spatially regulated by this micro RNA. The male sterile phenotype of the MYB33/MYB65 double mutant is light and temperature sensitive. Fertility can be restored with increased light intensity and lower temperatures.	O.I.	C.G.	S.X.
0.01	4e-1	36	At5g04130	830291	DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative	F:DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion;BOFMAVP	O.I.	C.G.	S.X.
0.01	4e-1	36	At5g20610	832183	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPBFAV	O.I.	C.G.	S.X.
0.01	4e-1	36	At3g19020	821435	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	S.X.
0.00	4e-1	36	At1g67120	843032	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding	F:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVA	O.I.	C.G.	S.X.
0.01	2e+0	34	At5g24120	832477	SIGE (SIGMA FACTOR E)	Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.	O.I.	C.G.	S.X.
0.01	2e+0	34	At5g15280	831380	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	C.G.	S.X.

Orthologous genes

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.31	3e-18	93	Gma.739.1.S1_at	Glycine max	BG882670	-	-	6e-15	At5g27490	integral membrane Yip1 family protein	O.I.	C.G.	S.X.
0.24	4e-15	81	Contig9005_at	Hordeum vulgare	Contig9005	-	-	1e-14	At3g05280	integral membrane Yip1 family protein	O.I.	C.G.	S.X.
0.12	1e-14	81	Os01g0610500	Oryza sativa	AK105469.1	-	Conserved hypothetical protein	1e-14	At3g05280	integral membrane Yip1 family protein	O.I.	C.G.	S.X.
0.42	1e-54	214	PtpAffx.675.5.S1_at	Populus trichocarpa	CF227425	hypothetical protein	-	4e-45	At5g27490	integral membrane Yip1 family protein	O.I.	C.G.	S.X.
0.04	4e-1	36	Ta.7590.2.S1_a_at	Triticum aestivum	CK215141	-	-	9e-8	At5g27490	integral membrane Yip1 family protein	O.I.	C.G.	S.X.
0.23	4e-23	107	1622567_at	Vitis vinifera	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	O.I.	C.G.	S.X.
0.23	2e-16	85	Zm.3919.1.S1_at	Zea mays	BG840867	hypothetical protein LOC100194180	-	7e-16	At3g05280	integral membrane Yip1 family protein	O.I.	C.G.	S.X.

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