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| Gene ID | At2g43010 |
| Gene name | PIF4 (phytochrome interacting factor 4) |
| Functional description | Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB. |
| HF | Ev | BS | Gene ID | Repr. ID | Gene Name | Functional Description | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|
| 0.33 | 3e-58 | 226 | At3g59060 | 825075 | PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) | Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B. | O.I. | C.G. | S.X. | |
| 0.10 | 2e-25 | 117 | At2g20180 | 816538 | PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) | Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression. | O.I. | C.G. | S.X. | |
| 0.05 | 4e-8 | 59 | At4g28811 | 5008170 | transcription regulator | F:transcription regulator activity;P:regulation of transcription;C:nucleus;PMFOBV | O.I. | C.G. | S.X. | |
| 0.06 | 3e-6 | 54 | At4g28815 | 5008171 | transcription regulator | F:transcription regulator activity;P:regulation of transcription;C:endomembrane system, nucleus;PMFO | O.I. | C.G. | S.X. |
| HF | Ev | BS | Gene ID | Organism | Repr. ID | Gene Name | Functional Description | Ev | AGI code | Arabidopsis gene name | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.05 | 4e-3 | 44 | GmaAffx.6008.1.S1_at | Glycine max | BU550119 | - | - | 9e-31 | At2g20180 | PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) | O.I. | C.G. | S.X. | |
| 0.06 | 5e-3 | 42 | HV_CEb0009B15r2_at | Hordeum vulgare | HV_CEb0009B15r2 | - | - | 8e-11 | At1g09530 | PIF3 (PHYTOCHROME INTERACTING FACTOR 3) | O.I. | C.G. | S.X. | |
| 0.08 | 6e-12 | 73 | Os12g0610200 | Oryza sativa | AK066763.1 | - | Phytochrome-interacting factor 3(Phytochrome-associated protein 3) (Basichelix-loop-helix protein 8) (bHLH8) (AtbHLH008) | 5e-12 | At2g43010 | PIF4 (phytochrome interacting factor 4) | O.I. | C.G. | S.X. | |
| 0.13 | 4e-18 | 93 | PtpAffx.1627.1.S1_a_at | Populus trichocarpa | AJ767188 | hypothetical protein | - | 3e-18 | At2g43010 | PIF4 (phytochrome interacting factor 4) | O.I. | C.G. | S.X. | |
| 0.02 | 4e-2 | 40 | TaAffx.54650.1.S1_at | Triticum aestivum | CA678847 | - | - | 4e-3 | At5g66815 | unknown protein | O.I. | C.G. | S.X. | |
| 0.02 | 2e-1 | 36 | 1611668_s_at | Vitis vinifera | CF212347 | hypothetical protein LOC100259663 | - | 7e-5 | At5g61310 | cytochrome c oxidase subunit Vc, putative / COX5C, putative | O.I. | C.G. | S.X. | |
| 0.02 | 2e-2 | 40 | ZmAffx.855.1.S1_at | Zea mays | AI770678 | - | - | 1e+1 | At5g23035 | - | O.I. | C.G. | S.X. |
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