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| Gene ID | At2g38080 |
| Gene name | IRX12 (IRREGULAR XYLEM 12) |
| Functional description | Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype. |
| HF | Ev | BS | Gene ID | Repr. ID | Gene Name | Functional Description | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|
| 0.27 | 7e-23 | 109 | At5g01190 | 831697 | LAC10 (laccase 10) | putative laccase, a member of laccase family of genes (17 members in Arabidopsis). | O.I. | C.G. | S.X. | |
| 0.17 | 1e-18 | 95 | At5g58910 | 836008 | LAC16 (laccase 16) | putative laccase, a member of laccase family of genes (17 members in Arabidopsis). | O.I. | C.G. | S.X. | |
| 0.11 | 1e-12 | 75 | At5g03260 | 831887 | LAC11 (laccase 11) | putative laccase, a member of laccase family of genes (17 members in Arabidopsis). | O.I. | C.G. | S.X. | |
| 0.03 | 4e-12 | 73 | At5g48100 | 834862 | TT10 (TRANSPARENT TESTA 10) | Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds. | O.I. | C.G. | S.X. | |
| 0.08 | 2e-8 | 61 | At5g05390 | 830421 | LAC12 (laccase 12) | putative laccase, a member of laccase family of genes (17 members in Arabidopsis). | O.I. | C.G. | S.X. | |
| 0.05 | 6e-5 | 50 | At2g30210 | 817571 | LAC3 (laccase 3) | putative laccase, a member of laccase family of genes (17 members in Arabidopsis). | O.I. | C.G. | S.X. | |
| 0.09 | 9e-4 | 46 | At5g60020 | 836124 | LAC17 (laccase 17) | putative laccase, a member of laccase family of genes (17 members in Arabidopsis). | O.I. | C.G. | S.X. | |
| 0.04 | 1e-2 | 42 | At2g40370 | 818630 | LAC5 (laccase 5) | putative laccase, a member of laccase family of genes (17 members in Arabidopsis). | O.I. | C.G. | S.X. | |
| 0.01 | 2e-1 | 38 | At3g26240 | 822226 | DC1 domain-containing protein | F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMBOF | O.I. | C.G. | S.X. |
| HF | Ev | BS | Gene ID | Organism | Repr. ID | Gene Name | Functional Description | Ev | AGI code | Arabidopsis gene name | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.10 | 6e-15 | 83 | GmaAffx.51444.2.S1_at | Glycine max | BQ612052 | - | - | 2e-35 | At5g60020 | LAC17 (laccase 17) | O.I. | C.G. | S.X. | |
| 0.03 | 1e-4 | 48 | Contig18447_at | Hordeum vulgare | Contig18447 | - | - | 2e-1 | At4g29670 | thioredoxin family protein | O.I. | C.G. | S.X. | |
| 0.09 | 1e-4 | 50 | Os01g0842400 | Oryza sativa | AK068901.1 | - | Laccase (EC 1.10.3.2) | 7e-5 | At2g38080 | IRX12 (IRREGULAR XYLEM 12) | O.I. | C.G. | S.X. | |
| 0.11 | 9e-17 | 89 | PtpAffx.164036.1.S1_at | Populus trichocarpa | Y13769.1 | - | - | 3e-22 | At5g01190 | LAC10 (laccase 10) | O.I. | C.G. | S.X. | |
| 0.07 | 9e-1 | 36 | Ta.4455.2.S1_x_at | Triticum aestivum | BJ255523 | - | - | 3e-1 | At2g38080 | IRX12 (IRREGULAR XYLEM 12) | O.I. | C.G. | S.X. | |
| 0.13 | 3e-25 | 115 | 1607667_at | Vitis vinifera | CF212686 | hypothetical protein LOC100240808 | - | 3e-32 | At5g01190 | LAC10 (laccase 10) | O.I. | C.G. | S.X. | |
| 0.02 | 6e+0 | 32 | Zm.2785.1.A1_at | Zea mays | CF004244 | major Facilitator superfamily protein | - | 2e-11 | At4g27720 | - | O.I. | C.G. | S.X. |
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