Homology analysis

Gene ID At2g32950
Functional description Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.013e-138At5g02100831841UNE18 (UNFERTILIZED EMBRYO SAC 18)Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.O.I.C.G.S.X.
0.013e-138At3g56210824787bindingF:binding;P:biological_process unknown;C:unknown;PO.I.C.G.S.X.
0.011e+036At5g36150833612ATPEN3 (putative pentacyclic triterpene synthase 3)F:lupeol synthase activity, catalytic activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMO.I.C.G.S.X.
0.011e+036At4g11420826746EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits.O.I.C.G.S.X.
0.011e+036At1g78500844186pentacyclic triterpene synthase, putativeEncodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, α-amyrin and bauerenol, this enzyme was also shown to produce two seco-triterpenes: α- and β-seco-amyrin.O.I.C.G.S.X.
0.014e+034Atcg01050--Represents a plastid-encoded subunit of a NAD(P)H dehydrogenase complex. Its mRNA is edited at four positions. Translation data is not available for this gene.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.397e-89329GmaAffx.74298.1.S1_atGlycine maxBI471684--2e-94At2g32950COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)O.I.C.G.S.X.
0.223e-39163Contig4365_atHordeum vulgareContig4365--5e-39At2g32950COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)O.I.C.G.S.X.
0.207e-28127Os02g0771100Oryza sativaAB040053.1-COP1 regulatory protein (Constitutivephotomorphogenesis protein 1)3e-29At2g32950COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)O.I.C.G.S.X.
0.401e-74282PtpAffx.102.1.A1_atPopulus trichocarpaCV257730hypothetical protein-1e-82At2g32950COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)O.I.C.G.S.X.
0.095e-963Ta.26673.1.A1_atTriticum aestivumCD491535--1e-9At2g32950COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)O.I.C.G.S.X.
0.023e-1361619942_atVitis viniferaCF568925--3e+0At3g57370transcription factor IIB (TFIIB) family proteinO.I.C.G.S.X.
0.014e-136Zm.7823.1.S1_atZea maysBM078187--3e-9At1g09130ATP-dependent Clp protease proteolytic subunit, putativeO.I.C.G.S.X.

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