CoP: Co-expressed Biological Processes

Homology analysis

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.
0.69	3e-60	232	At1g06960	837206	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFOPBV	O.I.	C.G.	S.X.
0.01	3e-1	36	At4g23700	828470	ATCHX17 (CATION/H+ EXCHANGER 17)	member of Putative Na+/H+ antiporter family	O.I.	C.G.	S.X.
0.01	3e-1	36	At1g01440	837155	extra-large G-protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	S.X.
0.02	3e-1	36	At1g10540	837595	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	S.X.
0.01	1e+0	34	At5g06460	830534	ATUBA2	Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined.	O.I.	C.G.	S.X.
0.04	1e+0	34	At4g29285	829050	LCR24 (Low-molecular-weight cysteine-rich 24)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	O.I.	C.G.	S.X.
0.01	1e+0	34	At3g54660	824631	GR (GLUTATHIONE REDUCTASE)	Encodes glutathione reductase that is most likely localized in the chloroplast.	O.I.	C.G.	S.X.

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.
0.30	2e-15	83	GmaAffx.58650.1.S1_at	Glycine max	BE021790	-	-	3e-28	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	C.G.	S.X.
0.08	2e-1	36	Contig6207_at	Hordeum vulgare	Contig6207	-	-	1e-4	At2g47580	U1A (SPLICEOSOMAL PROTEIN U1A)	O.I.	C.G.	S.X.
0.12	3e-3	44	Os.12051.1.S1_at	Oryza sativa	-	-	-	0			O.I.	C.G.	S.X.
0.35	1e-26	121	PtpAffx.9494.1.S1_at	Populus trichocarpa	DN491329	hypothetical protein	-	1e-26	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	C.G.	S.X.
0.11	6e-3	42	Ta.9408.1.S1_at	Triticum aestivum	BJ309615	-	-	2e-4	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	C.G.	S.X.
0.26	6e-34	143	1621155_at	Vitis vinifera	BQ794745	hypothetical protein LOC100248478	-	8e-34	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	C.G.	S.X.
0.17	4e-8	57	Zm.16475.2.S1_at	Zea mays	CK371021	-	-	2e-7	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	C.G.	S.X.

Gene ID	At2g30260
Gene name	U2B'' (U2 small nuclear ribonucleoprotein B)
Functional description	encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus.