CoP: Co-expressed Biological Processes

Homology analysis

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.
0.03	1e-1	38	At5g54580	835546	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA	O.I.	C.G.	S.X.
0.01	5e-1	36	At3g07530	819942	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFAB	O.I.	C.G.	S.X.
0.02	2e+0	34	At5g18810	831999	SCL28	encodes an SC35-like splicing factor of 28 kD localized to the nuclear specks.	O.I.	C.G.	S.X.
0.01	2e+0	34	At4g21270	827876	ATK1 (ARABIDOPSIS THALIANA KINESIN 1)	Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.	O.I.	C.G.	S.X.
0.02	2e+0	34	At3g04360	819591	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	S.X.
0.01	2e+0	34	At3g09240	820080	protein kinase-related	F:protein tyrosine kinase activity, binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMBOFVA	O.I.	C.G.	S.X.
0.03	8e+0	32	At5g12236	6240629	unknown protein	F:unknown;P:unknown;C:endomembrane system	O.I.	C.G.	S.X.
0.03	8e+0	32	At5g50801	6240737	unknown protein	F:unknown;P:unknown;C:unknown	O.I.	C.G.	S.X.

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.
0.02	3e+0	34	GmaAffx.68810.2.S1_at	Glycine max	BQ611057	-	-	2e-45	At4g02930	elongation factor Tu, putative / EF-Tu, putative	O.I.	C.G.	S.X.
0.02	4e+0	32	Contig25564_at	Hordeum vulgare	Contig25564	-	-	7e-1	At3g30220	unknown protein	O.I.	C.G.	S.X.
0.02	1e+0	36	OsAffx.6347.1.S1_at	Oryza sativa	-	-	-	0			O.I.	C.G.	S.X.
0.03	7e-1	36	PtpAffx.214996.1.S1_at	Populus trichocarpa	pmrna28934	hypothetical protein	-	2e-1	At2g22090	UBP1 interacting protein 1a (UBA1a)	O.I.	C.G.	S.X.
0.03	5e-1	36	TaAffx.52905.1.S1_x_at	Triticum aestivum	CA699169	-	-	2e-1	At2g22090	UBP1 interacting protein 1a (UBA1a)	O.I.	C.G.	S.X.
0.03	2e+0	32	1608382_at	Vitis vinifera	CF405318	-	-	4e+0	At5g54215	-	O.I.	C.G.	S.X.
0.02	3e+0	32	Zm.12248.3.A1_at	Zea mays	AI770379	Hypothetical protein LOC100216999	-	3e+0	At5g65660	hydroxyproline-rich glycoprotein family protein	O.I.	C.G.	S.X.

Gene ID	At2g22090
Gene name	UBP1 interacting protein 1a (UBA1a)
Functional description	encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.