CoP: Co-expressed Biological Processes

Homology analysis

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.	Other DB
0.49	1e-49	196	At4g39260	830082	GR-RBP8	Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	O.I.	C.G.	S.X.
0.13	7e-5	48	At4g13850	827019	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.	O.I.	C.G.	S.X.

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.
0.32	2e-12	73	GmaAffx.90323.1.A1_s_at	Glycine max	CF806048	-	-	4e-7	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	C.G.	S.X.
0.07	8e-3	40	Contig1025_s_at	Hordeum vulgare	Contig1025	-	-	3e-2	At3g48180	unknown protein	O.I.	C.G.	S.X.
0.19	8e-3	42	Os12g0632000	Oryza sativa	BI797959	-	Glycine-rich RNA-binding protein GRP1A	8e-1	At5g40970	unknown protein	O.I.	C.G.	S.X.
0.21	3e-11	69	Ptp.5864.3.A1_at	Populus trichocarpa	DN494422	-	-	2e-6	At4g39260	GR-RBP8	O.I.	C.G.	S.X.
0.06	7e-2	38	Ta.23397.2.S1_x_at	Triticum aestivum	CA718270	-	-	1e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	C.G.	S.X.
0.12	1e-6	52	1621554_s_at	Vitis vinifera	CF511998	similar to Os03g0670700	-	4e-6	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	C.G.	S.X.
0.07	3e-5	48	Zm.13944.6.S1_a_at	Zea mays	AI795502	glycine-rich RNA-binding protein 8	-	9e-10	At3g26420	ATRZ-1A	O.I.	C.G.	S.X.

Gene ID	At2g21660
Gene name	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)
Functional description	Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).