CoP: Co-expressed Biological Processes

Homology analysis

Gene ID At1g73870

Gene name zinc finger (B-box type) family protein

Functional description F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.	Other DB
0.01	4e-2	40	At5g67100	836845	ICU2 (INCURVATA2)	Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.	O.I.	C.G.	S.X.
0.03	4e-2	40	At1g68520	843181	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF	O.I.	C.G.	S.X.
0.01	6e-1	36	At3g21410	821695	F-box family protein (FBW1)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;PO	O.I.	C.G.	S.X.
0.02	6e-1	36	At3g50970	824261	LTI30 (LOW TEMPERATURE-INDUCED 30)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.	O.I.	C.G.	S.X.
0.01	6e-1	36	At1g68470	843176	exostosin family protein	F:catalytic activity;P:biological_process unknown;C:membrane;POM	O.I.	C.G.	S.X.
0.01	2e+0	34	At5g67260	836861	CYCD3	Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.	O.I.	C.G.	S.X.
0.02	2e+0	34	At5g57660	835872	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO	O.I.	C.G.	S.X.
0.02	2e+0	34	At4g29690	829090	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV	O.I.	C.G.	S.X.
0.01	2e+0	34	At4g18130	827538	PHYE (PHYTOCHROME DEFECTIVE E)	member of Histidine Kinase	O.I.	C.G.	S.X.

Orthologous genes

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.07	9e-4	46	GmaAffx.38616.1.S1_at	Glycine max	CD486925	-	-	4e-7	At1g25440	zinc finger (B-box type) family protein	O.I.	C.G.	S.X.
0.02	2e-2	40	Contig11985_at	Hordeum vulgare	Contig11985	-	-	3e-2	At5g18310	unknown protein	O.I.	C.G.	S.X.
0.03	1e+0	36	Os07g0261200	Oryza sativa	9635.m01571	-	-	4e-1	At5g47080	CKB1	O.I.	C.G.	S.X.
0.05	8e-4	46	PtpAffx.208952.1.S1_at	Populus trichocarpa	pmrna17739	hypothetical protein	-	8e-7	At1g25440	zinc finger (B-box type) family protein	O.I.	C.G.	S.X.
0.04	1e-2	42	TaAffx.143995.21.A1_at	Triticum aestivum	AY485644	-	-	1e-6	At5g24930	zinc finger (B-box type) family protein	O.I.	C.G.	S.X.
0.09	8e-16	83	1612095_at	Vitis vinifera	CB978502	hypothetical protein LOC100264474	-	2e-10	At1g25440	zinc finger (B-box type) family protein	O.I.	C.G.	S.X.
0.03	1e+0	34	Zm.10745.1.A1_at	Zea mays	BQ539349	hypothetical protein LOC100272654	-	4e-3	At4g25990	CIL	O.I.	C.G.	S.X.

Back to the CoP portal site

Back to the KAGIANA project homepage