Homology analysis

Gene ID At1g55060
Gene name UBQ12 (UBIQUITIN 12)
Functional description Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.602e-150531At5g37640833742UBQ9polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements.O.I.C.G.S.X.
0.444e-87321At5g20620832184UBQ4encodes a ubiquitin polyprotein.O.I.C.G.S.X.
0.595e-77287At1g65350842845UBQ13polyubiquitin gene,Columbia ecotype revealed that the gene contained a 3.9-kb insertion in the coding region from mitochondrial DNA.O.I.C.G.S.X.
0.362e-73276At5g03240831899UBQ3 (POLYUBIQUITIN 3)encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.611e-84313GmaAffx.93644.1.S1_x_atGlycine maxCF806647Ubiquitin-7e-139At4g05320UBQ10 (POLYUBIQUITIN 10)O.I.C.G.S.X.
0.669e-65246Contig1072_s_atHordeum vulgareContig1072--2e-133At4g05050UBQ11 (UBIQUITIN 11)O.I.C.G.S.X.
0.523e-55216Os02g0161900Oryza sativaAK101547.1-Ubiquitin0At4g05320UBQ10 (POLYUBIQUITIN 10)O.I.C.G.S.X.
0.581e-63244Ptp.222.2.A1_x_atPopulus trichocarpaBP932909--2e-105At1g65350UBQ13O.I.C.G.S.X.
0.544e-47188TaAffx.97978.1.S1_atTriticum aestivumBQ801131--4e-81At4g05050UBQ11 (UBIQUITIN 11)O.I.C.G.S.X.
0.453e-451801620334_atVitis viniferaCF205130.1--3e-81At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.C.G.S.X.
0.363e-30131Zm.2925.1.A1_atZea maysBM338886polyubiquitin containing 7 ubiquitin monomers-1e-160At4g05320UBQ10 (POLYUBIQUITIN 10)O.I.C.G.S.X.



Back to the CoP portal site

Back to the KAGIANA project homepage