Homology analysis

Gene ID At1g54540
Gene name -
Functional description F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.012e-240At1g31150840000transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;POMFBO.I.C.G.S.X.
0.039e-238At3g47180823871zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.S.X.
0.014e-136At1g30460839925CPSF30Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion.O.I.C.G.S.X.
0.021e+034At5g37560833734zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.S.X.
0.011e+034At5g46600834703unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFO.I.C.G.S.X.
0.021e+034At5g62790836400DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. Arabidopsis DXR is targeted to plastids and localizes into chloroplasts of leaf cells. DXR knockout or strongly silenced lines have a seedling lethal, albino phenotype. Transgenic, partially silenced lines expressing 35S:DXR have a variegated phenotype.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.035e-136PsAffx.psHB036xC16f_atGlycine maxPsAffx.psHB036xC16f--2e-1At1g54540-O.I.C.G.S.X.
0.037e-134HT10O19r_atHordeum vulgareHT10O19r--1e-2At5g59000zinc finger (C3HC4-type RING finger) family proteinO.I.C.G.S.X.
0.023e+034Os02g0628800Oryza sativaAK058725.1-Ubiquitin-like protein 52e-30At3g45180ubiquitin family proteinO.I.C.G.S.X.
0.192e-963PtpAffx.217926.1.S1_atPopulus trichocarpapmrna33389hypothetical protein-1e-9At1g54540-O.I.C.G.S.X.
0.032e+034TaAffx.84489.1.S1_atTriticum aestivumCA706594--5e-2At5g23260TT16 (TRANSPARENT TESTA16)O.I.C.G.S.X.
0.032e+0321619690_atVitis viniferaCB975062--9e-1At5g49800-O.I.C.G.S.X.
0.036e-134Zm.12790.2.S1_atZea maysAI665589--8e-1At3g05540-O.I.C.G.S.X.



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