Homology analysis

Gene ID At1g54490
Functional description Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.115e-1997At1g75660843900XRN3Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.O.I.C.G.S.X.
0.081e-1069At5g42540834261XRN2 (EXORIBONUCLEASE 2)Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN2 acts as a suppressor of posttranscriptional gene silencing.O.I.C.G.S.X.
0.014e-138At5g51020835175CRL (CRUMPLED LEAF)Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division.O.I.C.G.S.X.
0.014e-138At5g02850831762hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBO.I.C.G.S.X.
0.014e-138At5g06170830504ATSUC9 (Sucrose-proton symporter 9)sucrose symporter with hight affinity for sucrose (K0.5=0.066 +/- 0.025mM), that can also transport a wide range of glucosides.O.I.C.G.S.X.
0.011e+036At5g64630836584FAS2 (FASCIATA 2)Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.O.I.C.G.S.X.
0.011e+036At5g38210833803serine/threonine protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.142e-1689GmaAffx.38761.1.S1_atGlycine maxAI794773--2e-17At1g54490XRN4 (EXORIBONUCLEASE 4)O.I.C.G.S.X.
0.024e-240EBed02_SQ003_E04_atHordeum vulgareEBed02_SQ003_E04--1e+0At1g70850MLP34 (MLP-LIKE PROTEIN 34)O.I.C.G.S.X.
0.172e-25119Os03g0794800Oryza sativaAK058269.1-XRN32e-25At1g54490XRN4 (EXORIBONUCLEASE 4)O.I.C.G.S.X.
0.332e-37159PtpAffx.210971.1.S1_atPopulus trichocarpapmrna21552hypothetical protein-2e-37At1g54490XRN4 (EXORIBONUCLEASE 4)O.I.C.G.S.X.
0.084e-757Ta.27926.2.S1_atTriticum aestivumBJ301489--2e-7At1g54490XRN4 (EXORIBONUCLEASE 4)O.I.C.G.S.X.
0.012e+0341611252_atVitis viniferaCB982612--4e+0At1g62780unknown proteinO.I.C.G.S.X.
0.012e-138Zm.3694.1.A1_atZea maysCF627007pollen ankyrin-like protein-2e+0At1g19120small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.C.G.S.X.

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