Homology analysis

Gene ID At1g53500
Functional description encodes a putative NDP-L-rhamnose synthase, an enzyme required for the synthesis of the pectin rhamnogalacturonan I, the major component of Arabidopsis mucilage. Gene is involved in seed coat mucilage cell development. Mutant analyses suggest that MUM4 is required for complete mucilage synthesis, cytoplasmic rearrangement and seed coat development.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.800866At3g14790820707RHM3 (RHAMNOSE BIOSYNTHESIS 3)F:UDP-L-rhamnose synthase activity, catalytic activity;P:UDP-rhamnose biosynthetic process, nucleotide-sugar metabolic process;C:soluble fraction;OBMPAFVO.I.C.G.S.X.
0.730658At1g78570844193RHM1 (RHAMNOSE BIOSYNTHESIS 1)Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli.O.I.C.G.S.X.
0.242e-20101At1g63000842603NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE)F:UDP-4-keto-rhamnose-4-keto-reductase activity, dTDP-4-dehydrorhamnose reductase activity, UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity, dTDP-4-dehydrorhamnose 3,5-epimerase activity;P:dTDP-rhamnose biosynthetic process, UDP-rhamnose biosynthetic process;C:soluble fraction, plasma membrane;BOPAFMVO.I.C.G.S.X.
0.012e-242At5g60230836145SEN2 (splicing endonuclease 2)putative subunit of tRNA splicing endonucleaseO.I.C.G.S.X.
0.011e+036At5g65970836727MLO10 (MILDEW RESISTANCE LOCUS O 10)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(sO.I.C.G.S.X.
0.011e+036At5g22090832270unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOPFBVO.I.C.G.S.X.
0.011e+036At5g39250833921F-box family proteinF:molecular_function unknown;P:unknown;C:unknown;PMOO.I.C.G.S.X.
0.011e+036At4g168076241030unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.476e-43176Gma.7572.1.S1_atGlycine maxBI970498--5e-77At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)O.I.C.G.S.X.
0.371e-50200Contig4348_atHordeum vulgareContig4348--1e-84At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)O.I.C.G.S.X.
0.373e-58228Os03g0278200Oryza sativaAK103544.1-NAD-dependent epimerase/dehydratase family protein6e-83At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)O.I.C.G.S.X.
0.436e-40167PtpAffx.5688.1.S1_atPopulus trichocarpaCV238865hypothetical protein-9e-72At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)O.I.C.G.S.X.
0.357e-48192Ta.28218.1.S1_a_atTriticum aestivumCK157558--2e-58At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)O.I.C.G.S.X.
0.427e-732741614216_atVitis viniferaCF512284hypothetical protein LOC100260586-2e-72At1g53500MUM4 (MUCILAGE-MODIFIED 4)O.I.C.G.S.X.
0.321e-1377Zm.13518.1.A1_atZea maysCO522595hypothetical protein LOC100191391-3e-43At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)O.I.C.G.S.X.

Back to the CoP portal site

Back to the KAGIANA project homepage