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| Gene ID | At1g53090 |
| Gene name | SPA4 (SPA1-RELATED 4) |
| Functional description | Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. |
| HF | Ev | BS | Gene ID | Repr. ID | Gene Name | Functional Description | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|
| 0.63 | 1e-114 | 414 | At3g15354 | 820767 | SPA3 (SPA1-RELATED 3) | Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants. | O.I. | C.G. | S.X. | |
| 0.01 | 5e-3 | 44 | At3g56940 | 824861 | CRD1 (COPPER RESPONSE DEFECT 1) | Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site. | O.I. | C.G. | S.X. | |
| 0.01 | 3e-1 | 38 | At5g50400 | 835108 | PAP27 (PURPLE ACID PHOSPHATASE 27) | F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;POMBF | O.I. | C.G. | S.X. | |
| 0.01 | 3e-1 | 38 | At5g03500 | 831822 | transcription coactivator | F:transcription coactivator activity;P:positive regulation of transcription;C:nucleus;MFOP | O.I. | C.G. | S.X. | |
| 0.01 | 3e-1 | 38 | At5g66750 | 836808 | CHR1 (CHROMATIN REMODELING 1) | Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation. | O.I. | C.G. | S.X. | |
| 0.01 | 3e-1 | 38 | At5g03220 | 831902 | transcriptional co-activator-related | F:transcription coactivator activity;P:positive regulation of transcription;C:nucleus;MFOP | O.I. | C.G. | S.X. | |
| 0.01 | 3e-1 | 38 | At3g46790 | 823832 | CRR2 (CHLORORESPIRATORY REDUCTION 2) | Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-H subfamily) with 9 pentatricopeptide (PPR) repeats. The protein is involved the intergenic processing of chloroplast RNA between rps7 and ndhB, which is essential for ndhB translation. | O.I. | C.G. | S.X. |
| HF | Ev | BS | Gene ID | Organism | Repr. ID | Gene Name | Functional Description | Ev | AGI code | Arabidopsis gene name | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.10 | 1e-10 | 69 | GmaAffx.73452.2.S1_at | Glycine max | BM085321 | - | - | 2e-11 | At1g53090 | SPA4 (SPA1-RELATED 4) | O.I. | C.G. | S.X. | |
| 0.05 | 6e-7 | 56 | Contig7411_at | Hordeum vulgare | Contig7411 | - | - | 7e-9 | At3g15354 | SPA3 (SPA1-RELATED 3) | O.I. | C.G. | S.X. | |
| 0.08 | 2e-7 | 59 | Os01g0725800 | Oryza sativa | AK063441.1 | - | Protein kinase family protein | 3e-19 | At2g47110 | UBQ6 | O.I. | C.G. | S.X. | |
| 0.09 | 7e-6 | 54 | PtpAffx.105861.1.A1_at | Populus trichocarpa | CV243735 | hypothetical protein | - | 2e-6 | At1g53090 | SPA4 (SPA1-RELATED 4) | O.I. | C.G. | S.X. | |
| 0.03 | 6e-9 | 63 | Ta.24260.1.A1_at | Triticum aestivum | CA662036 | - | - | 4e-4 | At3g15354 | SPA3 (SPA1-RELATED 3) | O.I. | C.G. | S.X. | |
| 0.05 | 4e-4 | 46 | 1621339_at | Vitis vinifera | CF514970 | hypothetical protein LOC100253988 | - | 4e-4 | At1g53090 | SPA4 (SPA1-RELATED 4) | O.I. | C.G. | S.X. | |
| 0.01 | 8e-3 | 42 | Zm.7097.2.A1_a_at | Zea mays | CF019338 | hypothetical protein LOC100273341 /// 40S ribosomal protein S18 | - | 2e-27 | At1g22780 | PFL (POINTED FIRST LEAVES) | O.I. | C.G. | S.X. |
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