Homology analysis

Gene ID At1g30460
Gene name CPSF30
Functional description Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.013e-448At2g45810819189DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;OMBFPAVO.I.C.G.S.X.
0.011e-346At5g11710831043epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedEPSIN1 plays an important role in the vacuolar trafficking of soluble proteins at the trans-Golgi network via its interaction with gamma-ADR, VTI11, VSR1, and clathrin. Associated with actin filaments and with the Golgi complex. Expressed in most tissues.O.I.C.G.S.X.
0.021e-346At1g22330838839RNA binding / nucleic acid binding / nucleotide bindingF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.C.G.S.X.
0.014e-344At5g20730832196NPH4 (NON-PHOTOTROPHIC HYPOCOTYL)Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.O.I.C.G.S.X.
0.024e-344At5g62090836329-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.021e-346GmaAffx.41684.1.S1_atGlycine maxBM177015--2e-4At1g44100AAP5O.I.C.G.S.X.
0.027e-342Contig13781_atHordeum vulgareContig13781--6e-6At1g22330RNA binding / nucleic acid binding / nucleotide bindingO.I.C.G.S.X.
0.023e-242OsAffx.19518.1.S1_atOryza sativa---0O.I.C.G.S.X.
0.329e-85315PtpAffx.209828.1.S1_s_atPopulus trichocarpapmrna19374hypothetical protein-5e-95At1g30460CPSF30O.I.C.G.S.X.
0.021e-346TaAffx.79383.1.S1_atTriticum aestivumCA716967--6e-2At1g49010myb family transcription factorO.I.C.G.S.X.
0.027e-2381608903_atVitis viniferaCF516993hypothetical protein LOC100245579-9e-10At3g14100oligouridylate-binding protein, putativeO.I.C.G.S.X.
0.022e-344Zm.7336.1.A1_atZea maysAF371263.1hypothetical protein LOC100279133 /// 50kD gamma zein-2e-3At1g30460CPSF30O.I.C.G.S.X.



Back to the CoP portal site

Back to the KAGIANA project homepage