Homology analysis

Gene ID At1g20510
Gene name OPCL1 (OPC-8:0 COA LIGASE1)
Functional description F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAV

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.224e-24113At1g205008386384-coumarate-CoA ligaseF:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAVO.I.C.G.S.X.
0.394e-1893At1g20490838637AMP-dependent synthetase and ligase family proteinF:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAVO.I.C.G.S.X.
0.314e-1893At1g204808386364-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinF:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:cellular_component unknown;BOFMPAVO.I.C.G.S.X.
0.059e-1065At1g516808415934CL1 (4-COUMARATE:COA LIGASE 1)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.O.I.C.G.S.X.
0.033e-654At3g212308216774CL5 (4-coumarate:CoA ligase 5)The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.O.I.C.G.S.X.
0.032e-448At3g212408216784CL2 (4-COUMARATE:COA LIGASE 2)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.183e-29131Gma.10960.1.S1_s_atGlycine maxBQ453915--2e-29At1g20510OPCL1 (OPC-8:0 COA LIGASE1)O.I.C.G.S.X.
0.092e-344Contig16738_atHordeum vulgareContig16738--2e-3At1g20510OPCL1 (OPC-8:0 COA LIGASE1)O.I.C.G.S.X.
0.032e-346OsAffx.21790.1.S1_atOryza sativa---0O.I.C.G.S.X.
0.141e-1895Ptp.1382.1.A1_atPopulus trichocarpaCV258748acyl:coa ligase-5e-19At1g20510OPCL1 (OPC-8:0 COA LIGASE1)O.I.C.G.S.X.
0.079e-446TaAffx.97935.1.S1_atTriticum aestivumBQ801609--4e-4At1g20510OPCL1 (OPC-8:0 COA LIGASE1)O.I.C.G.S.X.
0.054e-9611610552_atVitis viniferaCF201894.1--5e-10At5g633804-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinO.I.C.G.S.X.
0.032e-240Zm.777.1.S1_a_atZea maysCD442368hypothetical protein LOC100272376-4e-8At5g633804-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinO.I.C.G.S.X.



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