Homology analysis

Gene ID At1g12820
Functional description F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:cellular_component unknown;PMFOB

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.760664At3g26810822296AFB2 (AUXIN SIGNALING F-BOX 2)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:plasma membrane;PMOFBO.I.C.G.S.X.
0.091e-552At3g62980825473TIR1 (TRANSPORT INHIBITOR RESPONSE 1)Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation.O.I.C.G.S.X.
0.034e-344At4g03190828045GRH1 (GRR1-LIKE PROTEIN 1)Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.O.I.C.G.S.X.
0.016e-240At3g63130825488RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1)Encodes a RAN GTPase activating protein involved in nuclear import, cell plate formation and mitotic spindle formation.O.I.C.G.S.X.
0.022e-138At5g49980835062AFB5 (Auxin F-Box protein 5)F:ubiquitin-protein ligase activity;P:unknown;C:unknown;PMOFO.I.C.G.S.X.
0.012e-138At1g50520841474CYP705A27member of CYP705AO.I.C.G.S.X.
0.019e-136At5g51460835220ATTPPAhomologous to the C-terminal part of microbial trehalose-6-phosphate phosphatasesO.I.C.G.S.X.
0.029e-136At5g42655834274-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.271e-1275Gma.1049.1.S1_atGlycine maxAW733460--4e-18At1g12820AFB3 (AUXIN SIGNALING F-BOX 3)O.I.C.G.S.X.
0.047e+032Contig15906_atHordeum vulgareContig15906--1e-1At3g26810AFB2 (AUXIN SIGNALING F-BOX 2)O.I.C.G.S.X.
0.033e-861Os.10149.1.S1_atOryza sativa---0O.I.C.G.S.X.
0.194e-25117PtpAffx.87935.1.S1_atPopulus trichocarpaBU837659f-box family protein-3e-24At3g26810AFB2 (AUXIN SIGNALING F-BOX 2)O.I.C.G.S.X.
0.041e-242Ta.3802.1.S1_atTriticum aestivumBJ247888--1e-1At1g04778unknown proteinO.I.C.G.S.X.
0.067e-11671611859_atVitis viniferaCF210940hypothetical protein LOC100263524-2e-13At1g12820AFB3 (AUXIN SIGNALING F-BOX 3)O.I.C.G.S.X.
0.024e-446Zm.5829.1.A1_atZea maysCA399817hypothetical protein LOC100278846-8e-3At4g03190GRH1 (GRR1-LIKE PROTEIN 1)O.I.C.G.S.X.

Back to the CoP portal site

Back to the KAGIANA project homepage