CoP: Co-expressed Biological Processes

Homology analysis

Gene ID At1g04250

Gene name AXR3 (AUXIN RESISTANT 3)

Functional description Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.	Other DB
0.39	1e-13	77	At4g14550	827102	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	IAA14 is a member of the Aux/IAA protein family. Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19.	O.I.	C.G.	S.X.
0.13	1e-10	67	At3g04730	819633	IAA16	early auxin-induced (IAA16)	O.I.	C.G.	S.X.
0.36	4e-10	65	At3g23050	821879	IAA7 (INDOLE-3-ACETIC ACID 7)	Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.	O.I.	C.G.	S.X.
0.07	2e-8	59	At5g43700	834390	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	Auxin inducible protein similar to transcription factors.	O.I.	C.G.	S.X.
0.10	2e-8	59	At2g22670	816798	IAA8	IAA8 (IAA8) gene is auxin inducible.	O.I.	C.G.	S.X.
0.15	4e-7	56	At1g04240	839570	SHY2 (SHORT HYPOCOTYL 2)	SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.	O.I.	C.G.	S.X.

Orthologous genes

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.17	8e-9	61	Gma.5105.1.S1_at	Glycine max	BI970991	-	-	5e-28	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	C.G.	S.X.
0.15	2e-10	65	Contig2501_at	Hordeum vulgare	Contig2501	-	-	4e-14	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	C.G.	S.X.
0.13	1e-5	52	Os12g0601300	Oryza sativa	AK068213.1	-	Auxin-responsive protein (Aux/IAA) (Fragment)	4e-18	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	C.G.	S.X.
0.26	3e-11	69	PtpAffx.33919.2.A1_s_at	Populus trichocarpa	CN550161	hypothetical protein	-	9e-21	At3g04730	IAA16	O.I.	C.G.	S.X.
0.12	2e-2	40	Ta.1890.2.S1_a_at	Triticum aestivum	CA641371	-	-	4e-14	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	C.G.	S.X.
0.23	4e-10	63	1613468_at	Vitis vinifera	CF405048	hypothetical protein LOC100250231	-	3e-55	At3g04730	IAA16	O.I.	C.G.	S.X.
0.14	1e-14	79	Zm.3607.1.A1_at	Zea mays	AW017627	IAA30 - auxin-responsive Aux/IAA family member	-	1e-14	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	C.G.	S.X.

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