Homology analysis

Gene ID At1g02340
Functional description Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.045e-756At3g62090825382PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2)encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.O.I.C.G.S.X.
0.027e-342At2g46970819311PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1)encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.O.I.C.G.S.X.
0.011e-138At4g19660827710NPR4 (NPR1-like protein 4)Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways.O.I.C.G.S.X.
0.021e-138At2g414516241352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.S.X.
0.024e-136At5g10950830962cylicin-relatedF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.C.G.S.X.
0.024e-136At4g31040829231proton extrusion protein-relatedF:unknown;P:biological_process unknown;C:integral to membrane, chloroplast;PBOFO.I.C.G.S.X.
0.014e-136At1g05910837101cell division cycle protein 48-related / CDC48-relatedF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BMOFPAVO.I.C.G.S.X.
0.012e+034At5g63940836515protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.036e-136GmaAffx.67477.1.S1_atGlycine maxCD406880--7e-5At4g16830nuclear RNA-binding protein (RGGA)O.I.C.G.S.X.
0.022e-136Contig16695_atHordeum vulgareContig16695--2e-2At5g20900JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)O.I.C.G.S.X.
0.049e-136OsAffx.18071.1.S1_atOryza sativa---0O.I.C.G.S.X.
0.036e-136PtpAffx.8577.1.S1_atPopulus trichocarpaDN499916--5e-20At4g08950EXO (EXORDIUM)O.I.C.G.S.X.
0.035e-136Ta.17083.1.S1_atTriticum aestivumCA617395--1e-2At3g14320zinc finger (C3HC4-type RING finger) family proteinO.I.C.G.S.X.
0.035e-1341612485_atVitis viniferaCF516820--2e+0At1g02340HFR1 (LONG HYPOCOTYL IN FAR-RED)O.I.C.G.S.X.
0.043e+032Zm.18039.1.A1_atZea maysCK985952hypothetical protein LOC100191748-1e+0At5g2806040S ribosomal protein S24 (RPS24B)O.I.C.G.S.X.

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