Homology analysis

Gene ID At1g01060
Gene name LHY (LATE ELONGATED HYPOCOTYL)
Functional description LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.085e-1583At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.S.X.
0.023e-448At1g75520843888SRS5 (SHI-RELATED SEQUENCE 5)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.O.I.C.G.S.X.
0.012e-242At4g35310829685CPK5 (calmodulin-domain protein kinase 5)calmodulin-domain protein kinase CDPK isoform 5 (CPK5)O.I.C.G.S.X.
0.012e-138At5g54910835582DEAD/DEAH box helicase, putativeF:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:nucleolus;BOMFPAVO.I.C.G.S.X.
0.012e-138At5g49700835033DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;PMBFO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.129e-859GmaAffx.42059.1.S1_atGlycine maxBM892355MYB transcription factor MYB173 /// MYB transcription factor MYB174-9e-10At5g17300myb family transcription factorO.I.C.G.S.X.
0.079e-21101Contig3873_atHordeum vulgareContig3873--3e-20At1g01060LHY (LATE ELONGATED HYPOCOTYL)O.I.C.G.S.X.
0.077e-31137Os08g0157600Oryza sativaAY452478.1-Myb, DNA-binding domain containing protein5e-31At1g01060LHY (LATE ELONGATED HYPOCOTYL)O.I.C.G.S.X.
0.111e-37159PtpAffx.7997.1.S1_atPopulus trichocarpaBU868664hypothetical protein-2e-10At2g46830CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)O.I.C.G.S.X.
0.021e-656Ta.7524.1.A1_atTriticum aestivumBJ250276--6e-7At1g01060LHY (LATE ELONGATED HYPOCOTYL)O.I.C.G.S.X.
0.134e-19951607032_s_atVitis viniferaCB345316hypothetical protein LOC100250535-2e-18At1g01060LHY (LATE ELONGATED HYPOCOTYL)O.I.C.G.S.X.
0.063e-2099Zm.7073.2.A1_atZea maysAI600777--1e-2At5g37260RVE2 (REVEILLE 2)O.I.C.G.S.X.



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