Homology analysis

Gene ID 1621155_at
Gene name hypothetical protein LOC100248478
Functional description Similar to At2g30260: U2B'' (U2 small nuclear ribonucleoprotein B) (Ev=8e-34)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.044e-5481621004_atCF515809hypothetical protein LOC100243572-3e-21At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)O.I.C.G.S.X.
0.026e-1341610562_atCF514967hypothetical protein LOC100249618-4e-32At2g39130amino acid transporter family proteinO.I.C.G.S.X.
0.022e+0321622573_atCF214631hypothetical protein LOC100266218-4e-1Atcg00070-O.I.C.G.S.X.
0.012e+0321620315_atCF604880--3e-6At2g36480zinc finger (C2H2-type) family proteinO.I.C.G.S.X.
0.022e+0321619939_atCB971326--2e+1At5g43430ETFBETAO.I.C.G.S.X.
0.022e+0321616480_atCF205176.1--3e-2At1g23147RALFL3 (RALF-LIKE 3)O.I.C.G.S.X.
0.022e+0321615591_atCD799009--2e+0At2g29460ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)O.I.C.G.S.X.
0.022e+0321612953_atCF606754hypothetical LOC100254354-2e+0At2g2045060S ribosomal protein L14 (RPL14A)O.I.C.G.S.X.
0.012e+0321612487_atCB981514hypothetical protein LOC100247157-6e-1At2g39060nodulin MtN3 family proteinO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.278e-34145At2g30260Arabidopsis thaliana817576U2B'' (U2 small nuclear ribonucleoprotein B)encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus.---O.I.C.G.S.X.
0.341e-54214GmaAffx.58650.1.S1_atGlycine maxBE021790--3e-28At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.C.G.S.X.
0.047e-857Contig7570_atHordeum vulgareContig7570--1e-7At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.C.G.S.X.
0.057e-1169Os.12051.1.S1_atOryza sativa---0O.I.C.G.S.X.
0.213e-49196PtpAffx.9494.1.S1_atPopulus trichocarpaDN491329hypothetical protein-1e-26At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.C.G.S.X.
0.065e-446TaAffx.30652.1.S1_atTriticum aestivumCA623146--3e-4At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.C.G.S.X.
0.142e-1065Zm.16475.4.S1_atZea maysBG841751--1e-3At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.C.G.S.X.



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