Homology analysis

Gene ID 1615991_s_at
Gene name hypothetical protein LOC100241833
Functional description Similar to At4g38130: HD1 (HISTONE DEACETYLASE 1) (Ev=1e-22)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.97014371617779_atCF404409hypothetical protein LOC100241833-1e-22At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.6308721614482_atCF206009.1hypothetical protein LOC100241833-2e-21At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.307e-772861612276_atCF403133hypothetical protein LOC100262110-1e+0At1g80160lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.C.G.S.X.
0.031e-4461620045_atCF413997similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase-4e-38At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.C.G.S.X.
0.022e+0321620891_atCD715446--3e-69At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)O.I.C.G.S.X.
0.042e+0321618184_atBQ795140hypothetical protein LOC100255523-5e-84At1g78870UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)O.I.C.G.S.X.
0.022e+0321617124_atCD715446hypothetical protein LOC100247246-3e-69At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)O.I.C.G.S.X.
0.032e+0321614651_atCF403860--2e-1At2g32650-O.I.C.G.S.X.
0.032e+0321612869_atCF210466hypothetical protein LOC100250869-3e-1At5g06950AHBP-1BO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.201e-22107At4g38130Arabidopsis thaliana829969HD1 (HISTONE DEACETYLASE 1)Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.---O.I.C.G.S.X.
0.059e-652Gma.2052.1.S1_atGlycine maxBM522377--9e-3At1g44830AP2 domain-containing transcription factor TINY, putativeO.I.C.G.S.X.
0.101e-2099Contig5301_atHordeum vulgareContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.054e-1273Os06g0583400Oryza sativaAF513382.1-Histone deacetylase HDAC16e-61At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.258e-31135PtpAffx.6033.2.S1_atPopulus trichocarpaBU889316histone deacetylase-9e-55At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.098e-1891Ta.23826.1.S1_atTriticum aestivumBT009381.1Histone deacetylase HDAC3-3e-41At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.092e-25115Zm.398.1.S1_atZea maysAF384032.1histone deacetylase HDA101 /// RPD3 histone deacetylase homolog-1e-30At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.



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