Co-expression analysis

Gene ID	rbasd21g03_s_at
Gene name
Homology with Arabidopsis	Similar to At4g39900: unknown protein (HF=8e+0)
Module size	10 genes
NF	0.17
%ile	20.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	0.94	rbasd21g03_s_at	rbasd21g03	-	-	8e+0	At4g39900	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig12120_at	Contig12120	-	-	3e-25	At5g51280	DEAD-box protein abstrakt, putative	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig24881_s_at	Contig24881	-	-	5e-2	At1g75340	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.97	Contig7152_at	Contig7152	-	-	2e-34	At3g58600	-	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.96	Contig7044_at	Contig7044	-	-	4e-3	At5g42090	-	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig4647_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.97	Contig4131_at	Contig4131	-	-	2e-23	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.95	Contig4722_at	Contig4722	-	-	5e-21	At5g41010	NRPB12	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.96	Contig19935_at	Contig19935	-	-	2e-6	At3g58000	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9	93.4	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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