Co-expression analysis

Gene ID	rbah59f07_s_at
Gene name
Homology with Arabidopsis	Similar to At3g24160: PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) (HF=4e+0)
Module size	11 genes
NF	0.76
%ile	94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	rbah59f07_s_at	rbah59f07	-	-	4e+0	At3g24160	PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.96	Contig24657_at	Contig24657	-	-	2e-2	At5g18940	Mo25 family protein	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.96	Contig2990_at	Contig2990	-	-	1e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.96	rbaal22l07_s_at	rbaal22l07	vacuolar ATPase B subunit	-	1e-1	At3g44100	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.96	HVSMEg0011K10r2_x_at	HVSMEg0011K10r2	-	-	3e+0	At2g30695	-	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.96	Contig3659_at	Contig3659	-	-	3e-7	At4g29060	emb2726 (embryo defective 2726)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	HD13H12r_s_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.96	Contig682_s_at	Contig682	-	-	9e-13	At3g10410	scpl49 (serine carboxypeptidase-like 49)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	Contig30_s_at	Contig30	-	-	4e-19	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig3558_s_at	Contig3558	-	-	2e-15	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig4072_at	Contig4072	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.3	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9	93.4	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.8	93.1	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.8	93.1	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.8	93.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
2.7	92.7	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6	92.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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